Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1427 123 2e-23 seq338 116 3e-21 seq2834 114 1e-20 seq843 111 1e-19 seq355 104 2e-17 seq1360 95.1 1e-14 seq6 95.1 1e-14 seq51 91.5 1e-13 >seq1427 Length=108667 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | || | || || || || || |||||||| ||| Sbjct 17828 ACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 17769 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| || ||||| || ||| |||||||||| |||||||| || || Sbjct 17768 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 17709 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||||| ||||| ||| | | || | ||| |||| ||||||||| Sbjct 17708 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGAC 17649 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 17648 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601 >seq338 Length=211836 Score = 116 bits (128), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||||||| | |||||| ||||||||||| || || ||| ||| Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC--TG 114310 |||| |||||||| || || |||||||||||||||| ||| ||| | || | || Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAAT-TTTAGCCTTGACATTG 171417 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || | |||||| | ||||| || || | ||| | ||||| || || |||||||| || Sbjct 171418 TT-GATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 171476 Query 114371 AAAAATCTGCAT 114382 ||| || ||||| Sbjct 171477 AAATATTTGCAT 171488 >seq2834 Length=64598 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | || | || || || || || |||||||| ||| Sbjct 935 ACCACCACGAAGGCGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 876 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| || ||||| || ||| ||||||| || |||||||| || || Sbjct 875 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGG 816 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||||| ||||| ||| | | || | ||||| | ||||||||| Sbjct 815 GATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGAC 756 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 755 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 708 >seq843 Length=130910 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| |||| | || | ||| | ||| ||||| || |||||||||||||| Sbjct 120358 TACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTG 120299 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || | |||||| | |||||| ||||| |||| | || ||||| || || | Sbjct 120298 CAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTG 120239 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | |||||||||||||| ||||| ||| | | || | ||||| | ||||||| Sbjct 120238 GGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGA 120179 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 120178 CTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 120130 >seq355 Length=215899 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| || || || |||||| ||||||| | || || ||| ||||| || Sbjct 205043 ATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCAAGCTG 204984 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || ||||| |||| || | ||||||||| || ||||||||||| || || ||| || Sbjct 204983 CTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT-TT 204925 Query 114299 TTGTTTT-AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGG 114357 | ||||| | | |||| |||||||| | ||| || || | ||| | || || |||| Sbjct 204924 TGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCGG 204865 Query 114358 TCAGAGTTTTTACAAAAATCTGCATG 114383 | || || || ||||| ||||||||| Sbjct 204864 TGAGGGTCTTCACAAAGATCTGCATG 204839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || ||| ||||| ||||| || Sbjct 204808 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCG 204749 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||| ||||| ||||| || ||| ||||| Sbjct 204748 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGAT-TTTGGTTTT 204690 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | |||| ||||| | | ||| || || | ||| | || || || || || || Sbjct 204689 AACATTATCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT 204630 Query 114365 TTTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 204629 CTTTACAAAGATCTGCATG 204611 >seq1360 Length=99280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||||| || ||||| || Sbjct 35120 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCG 35179 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || |||||||| ||||| || ||||||||||| ||||| ||||| || Sbjct 35180 GCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTC 35239 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | |||||| || || | ||| | ||||| ||||| || ||| Sbjct 35240 ACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 35299 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 35300 TTCACGAATATCTGCAT 35316 >seq6 Length=1196388 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | || | ||| | || || || || || ||||||||||| Sbjct 29701 ATACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCA 29760 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || || || ||||| |||| | | ||| || ||||| Sbjct 29761 GCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGG 29820 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||||||||| |||| || || ||| | | || || ||||| | | ||| Sbjct 29821 GGGATTCCTTCTTTGTCCTGAATC-TTGGTCTTAACATTGTCGACAGTGTCAGAGCTTTC 29879 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| ||| |||||||| || ||||| Sbjct 29880 AACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCAT 29930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | || || || || || ||||||||||| Sbjct 29473 ATACCACCCCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCA 29532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || || || ||||| |||| | | ||| || ||||| Sbjct 29533 GCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGG 29592 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| || |||||||| |||| || || ||| | | |||| ||||| | | || Sbjct 29593 GGAATTCCCTCTTTGTCCTGAATC-TTAGTCTTAACATTGTCAATAGTGTCTGAGCTCTC 29651 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| ||| || |||||||| ||||| Sbjct 29652 AACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29702 >seq51 Length=574565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | ||| | ||||| || ||||||||||||||||| Sbjct 464622 ACCCCCACGAAGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGC 464563 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| ||| || | ||| || ||||| ||||||| | ||| ||||| || || Sbjct 464562 CAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 464503 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| |||||| || | | |||| || || | | || || Sbjct 464502 GATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAAC 464443 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 464442 CTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||| |||||||| || || | ||| || | || || || Sbjct 464135 GTAGATTCCTTCTGAATATTGTAATCAGCCAATGTCCTTCCATCATCCAACTGCTTCCCG 464076 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| || || ||||| ||||||| || || Sbjct 464075 GCAAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATCTTT-GTCTT 464017 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | || | ||||| | | ||| || |||| ||| | ||||| || || ||||| Sbjct 464016 AACGTTATCGATAGTGTCAGAGCTTTCAACTTCCAGGGTGATGGTTTTTCCAGTGAGAGT 463957 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 463956 CTTCACGAAAATCTGCAT 463939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420077061895176