Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1427 123 2e-23
seq338 116 3e-21
seq2834 114 1e-20
seq843 111 1e-19
seq355 104 2e-17
seq1360 95.1 1e-14
seq6 95.1 1e-14
seq51 91.5 1e-13
>seq1427
Length=108667
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | ||| | || | || || || || || |||||||| |||
Sbjct 17828 ACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 17769
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||| || |||||| || ||||| || ||| |||||||||| |||||||| || ||
Sbjct 17768 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 17709
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|||||||||||||| ||||| ||| | | || | ||| |||| |||||||||
Sbjct 17708 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGAC 17649
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | ||||| || || || ||||| || || ||||||||
Sbjct 17648 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601
>seq338
Length=211836
Score = 116 bits (128), Expect = 3e-21
Identities = 143/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252
|||| || |||||||||||| | |||||| ||||||||||| || || ||| |||
Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358
Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC--TG 114310
|||| |||||||| || || |||||||||||||||| ||| ||| | || | ||
Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAAT-TTTAGCCTTGACATTG 171417
Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| | |||||| | ||||| || || | ||| | ||||| || || |||||||| ||
Sbjct 171418 TT-GATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 171476
Query 114371 AAAAATCTGCAT 114382
||| || |||||
Sbjct 171477 AAATATTTGCAT 171488
>seq2834
Length=64598
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | ||| | || | || || || || || |||||||| |||
Sbjct 935 ACCACCACGAAGGCGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 876
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||| || |||||| || ||||| || ||| ||||||| || |||||||| || ||
Sbjct 875 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGG 816
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|||||||||||||| ||||| ||| | | || | ||||| | |||||||||
Sbjct 815 GATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGAC 756
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | ||||| || || || ||||| || || ||||||||
Sbjct 755 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 708
>seq843
Length=130910
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213
|||| ||||| |||| | || | ||| | ||| ||||| || ||||||||||||||
Sbjct 120358 TACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTG 120299
Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273
| || | |||||| | |||||| ||||| |||| | || ||||| || || |
Sbjct 120298 CAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTG 120239
Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333
| |||||||||||||| ||||| ||| | | || | ||||| | |||||||
Sbjct 120238 GGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGA 120179
Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || | ||| | ||||| || || || ||||| || |||||||||||
Sbjct 120178 CTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 120130
>seq355
Length=215899
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238
||| | ||| || || || |||||| ||||||| | || || ||| ||||| ||
Sbjct 205043 ATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCAAGCTG 204984
Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298
|| ||||| |||| || | ||||||||| || ||||||||||| || || ||| ||
Sbjct 204983 CTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT-TT 204925
Query 114299 TTGTTTT-AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGG 114357
| ||||| | | |||| |||||||| | ||| || || | ||| | || || ||||
Sbjct 204924 TGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCGG 204865
Query 114358 TCAGAGTTTTTACAAAAATCTGCATG 114383
| || || || ||||| |||||||||
Sbjct 204864 TGAGGGTCTTCACAAAGATCTGCATG 204839
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || ||||||||||| | ||| || ||| ||||| ||||| ||
Sbjct 204808 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCG 204749
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| ||||| || ||||| ||||| ||||| || ||| |||||
Sbjct 204748 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGAT-TTTGGTTTT 204690
Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | | |||| ||||| | | ||| || || | ||| | || || || || || ||
Sbjct 204689 AACATTATCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT 204630
Query 114365 TTTTACAAAAATCTGCATG 114383
|||||||| |||||||||
Sbjct 204629 CTTTACAAAGATCTGCATG 204611
>seq1360
Length=99280
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| ||| | || || ||||| || ||||| ||
Sbjct 35120 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCG 35179
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| | || |||||||| ||||| || ||||||||||| ||||| ||||| ||
Sbjct 35180 GCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTC 35239
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | ||||| | |||||| || || | ||| | ||||| ||||| || |||
Sbjct 35240 ACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 35299
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 35300 TTCACGAATATCTGCAT 35316
>seq6
Length=1196388
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || || | || | ||| | || || || || || |||||||||||
Sbjct 29701 ATACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCA 29760
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| || || || || ||||| |||| | | ||| || |||||
Sbjct 29761 GCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGG 29820
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
|| || ||||||||||| |||| || || ||| | | || || ||||| | | |||
Sbjct 29821 GGGATTCCTTCTTTGTCCTGAATC-TTGGTCTTAACATTGTCGACAGTGTCAGAGCTTTC 29879
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | ||||| || |||| ||| |||||||| || |||||
Sbjct 29880 AACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCAT 29930
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || || | ||| | ||| | || || || || || |||||||||||
Sbjct 29473 ATACCACCCCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCA 29532
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| || || || || ||||| |||| | | ||| || |||||
Sbjct 29533 GCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGG 29592
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
||||| || |||||||| |||| || || ||| | | |||| ||||| | | ||
Sbjct 29593 GGAATTCCCTCTTTGTCCTGAATC-TTAGTCTTAACATTGTCAATAGTGTCTGAGCTCTC 29651
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || |||| ||| || |||||||| |||||
Sbjct 29652 AACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29702
>seq51
Length=574565
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | ||| | ||| | ||||| || |||||||||||||||||
Sbjct 464622 ACCCCCACGAAGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGC 464563
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || ||| ||| || | ||| || ||||| ||||||| | ||| ||||| || ||
Sbjct 464562 CAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 464503
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|| || || ||||| |||||| || | | |||| || || | | || ||
Sbjct 464502 GATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAAC 464443
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || ||||| || || || ||||| ||||||||
Sbjct 464442 CTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|||||||| || ||||| |||||||| || || | ||| || | || || ||
Sbjct 464135 GTAGATTCCTTCTGAATATTGTAATCAGCCAATGTCCTTCCATCATCCAACTGCTTCCCG 464076
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| ||||| || ||||| || || ||||| ||||||| || ||
Sbjct 464075 GCAAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATCTTT-GTCTT 464017
Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | | || | ||||| | | ||| || |||| ||| | ||||| || || |||||
Sbjct 464016 AACGTTATCGATAGTGTCAGAGCTTTCAACTTCCAGGGTGATGGTTTTTCCAGTGAGAGT 463957
Query 114365 TTTTACAAAAATCTGCAT 114382
|| || |||||||||||
Sbjct 463956 CTTCACGAAAATCTGCAT 463939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420077061895176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |