Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20 158 2e-33 >seq20 Length=765589 Score = 158 bits (174), Expect = 2e-33 Identities = 414/629 (66%), Gaps = 12/629 (2%) Strand=Plus/Plus Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||||| || |||| ||| |||| || |||||||||||||| || |||||||| || Sbjct 521718 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTC 521777 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || |||||||| ||||| ||| ||| || ||| |||| Sbjct 521778 TCGAGAATCTCGCCGGAAGATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCT 521837 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | |||||||| ||||| | || | | | Sbjct 521838 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 521897 Query 42577 CGTACATCCTGGATCC---CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | |||||| ||| | | | || | | || || || || || || || | Sbjct 521898 CTTACATCAAAGATTCTAACCTTAAG---ACCCATCTTTTTCGTGCAATTGAAACTATCC 521954 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || | ||||||||||| || ||||| || ||||| || || | || | ||| Sbjct 521955 CTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 522011 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 | | |||||| || | || ||| | || || || || |||||||| || ||| Sbjct 522012 TTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 522071 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 |||||||||||||||||| || | || ||||| || | |||||||| ||||| | Sbjct 522072 GCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGC 522131 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || | ||||| ||||| || | || ||||||||||| || | | ||| | Sbjct 522132 TGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATAC---AGCTTAC 522188 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | | | | |||| ||| ||| | || || | | ||| || || || |||| Sbjct 522189 TGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTAAAGGATGCAGTCGAAATCG 522248 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 || |||||| | || | |||| || ||| ||||| || |||||| || || | Sbjct 522249 AGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGA 522308 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGAC 43022 || || ||||||| ||| || || ||| Sbjct 522309 TGAGCCAGTACATTGAGTTTGTTGCAGAC 522337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944207016120480