Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq20 158 2e-33
>seq20
Length=765589
Score = 158 bits (174), Expect = 2e-33
Identities = 414/629 (66%), Gaps = 12/629 (2%)
Strand=Plus/Plus
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
||||| || |||| ||| |||| || |||||||||||||| || |||||||| ||
Sbjct 521718 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTC 521777
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
||||| || ||| || |||||||| ||||| ||| ||| || ||| ||||
Sbjct 521778 TCGAGAATCTCGCCGGAAGATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCT 521837
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
| |||||||| || ||||| || ||| | |||||||| ||||| | || | | |
Sbjct 521838 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 521897
Query 42577 CGTACATCCTGGATCC---CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633
| |||||| ||| | | | || | | || || || || || || || |
Sbjct 521898 CTTACATCAAAGATTCTAACCTTAAG---ACCCATCTTTTTCGTGCAATTGAAACTATCC 521954
Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693
| || | ||||||||||| || ||||| || ||||| || || | || | |||
Sbjct 521955 CTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 522011
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753
| | |||||| || | || ||| | || || || || |||||||| || |||
Sbjct 522012 TTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 522071
Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813
|||||||||||||||||| || | || ||||| || | |||||||| ||||| |
Sbjct 522072 GCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGC 522131
Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873
| || | ||||| ||||| || | || ||||||||||| || | | ||| |
Sbjct 522132 TGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATAC---AGCTTAC 522188
Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933
| | | | |||| ||| ||| | || || | | ||| || || || ||||
Sbjct 522189 TGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTAAAGGATGCAGTCGAAATCG 522248
Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993
|| |||||| | || | |||| || ||| ||||| || |||||| || || |
Sbjct 522249 AGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGA 522308
Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGAC 43022
|| || ||||||| ||| || || |||
Sbjct 522309 TGAGCCAGTACATTGAGTTTGTTGCAGAC 522337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944207016120480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |