Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq51 104 2e-17 seq843 91.5 1e-13 >seq51 Length=574565 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||| |||||||| || | || ||||||||||| |||||||| || Sbjct 464166 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 464107 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| |||| | | || ||||| ||||| |||||||| ||||| | |||||| || | Sbjct 464106 CAA-TGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTG 464048 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| ||| ||| ||||| | | | | | |||| ||| Sbjct 464047 GAATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 463988 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || |||||||| || || || ||||| || || ||||| Sbjct 463987 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| || || |||||| |||||||||||||| ||||| ||| Sbjct 464612 AGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGA 464553 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | |||||| || || | | ||| Sbjct 464552 CCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCC 464493 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCGCATTCGACC 34086 |||||| ||| || ||| | | || || |||||| || || |||| Sbjct 464492 TTGTCCTGAATCTTAGTCTTCA---CATTCTCAATTGTATCAGAAGTCTCAACCTCGAGG 464436 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| || || ||||||||||| ||||| Sbjct 464435 GTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395 >seq843 Length=130910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||||||||| ||||||||||||||||||||||| | | || Sbjct 120347 AGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTT 120288 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||| || || ||||| || | ||| || ||||| || | || ||| Sbjct 120287 CCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCT 120228 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCGCATTCGACC 34086 ||||| | | ||| || || | | | | || | |||||| ||| | Sbjct 120227 TTGTC--TTGGATCTTGGTT-TTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGG 120171 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||||| ||||| || ||||| |||||||| || || ||||| ||| Sbjct 120170 GTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTT 120126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397008210660796