Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq51 104 2e-17
seq843 91.5 1e-13
>seq51
Length=574565
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| |||| ||| |||||||| || | || ||||||||||| |||||||| ||
Sbjct 464166 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 464107
Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
||| |||| | | || ||||| ||||| |||||||| ||||| | |||||| || |
Sbjct 464106 CAA-TGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTG 464048
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078
| | | ||| |||||| ||| ||| ||||| | | | | | |||| |||
Sbjct 464047 GAATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 463988
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | || || |||||||| || || || ||||| || || |||||
Sbjct 463987 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || || || ||||| || || |||||| |||||||||||||| ||||| |||
Sbjct 464612 AGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGA 464553
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || ||||||||||| || ||||| || || | |||||| || || | | |||
Sbjct 464552 CCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCC 464493
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCGCATTCGACC 34086
|||||| ||| || ||| | | || || |||||| || || ||||
Sbjct 464492 TTGTCCTGAATCTTAGTCTTCA---CATTCTCAATTGTATCAGAAGTCTCAACCTCGAGG 464436
Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || || ||||| || || ||||||||||| |||||
Sbjct 464435 GTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395
>seq843
Length=130910
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || ||||||||||||||||| ||||||||||||||||||||||| | | ||
Sbjct 120347 AGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTT 120288
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || |||||||| || || ||||| || | ||| || ||||| || | || |||
Sbjct 120287 CCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCT 120228
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCGCATTCGACC 34086
||||| | | ||| || || | | | | || | |||||| ||| |
Sbjct 120227 TTGTC--TTGGATCTTGGTT-TTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGG 120171
Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131
||||| ||||| || ||||| |||||||| || || ||||| |||
Sbjct 120170 GTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTT 120126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397008210660796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |