Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 3e-26
seq1360 127 5e-24
seq319 107 5e-18
seq51 102 2e-16
seq355 100 7e-16
>seq6
Length=1196388
Score = 134 bits (148), Expect = 3e-26
Identities = 171/233 (73%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || || | ||| |||||| || ||||| ||||| ||
Sbjct 28336 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCTTTCTGAATATTGTAGTCAGCC 28395
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||||||| || || | ||| || ||||| ||||| || | ||| || || |||
Sbjct 28396 AAGGTGCGTCCATCCTCGAGTTGCTTCCCTGCAAAGATTAGTCTCTGCTGG---TCCGGG 28452
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420
|| || || |||||||||||||| | |||||| || || | || ||| ||||
Sbjct 28453 GGAATCCCCTCCTTATCCTGGATTTTAGTTTTCACATTATCGACAGTATCTGAGCTC--- 28509
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| |||||||| |||| ||||||||| || ||||||||
Sbjct 28510 TCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 28562
Score = 100 bits (110), Expect = 7e-16
Identities = 142/197 (72%), Gaps = 12/197 (6%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| |||||||| || || || || || || || | ||||| || || |||
Sbjct 29968 TCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAG 30027
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||||||| |||||||||||||| || ||||| | |||||
Sbjct 30028 ATCAGACGCTGCTG---ATCTGGGGGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACA 30084
Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || | ||| ||| || || || || || || | ||| || || || ||
Sbjct 30085 TTATCAATCGTATCAGAACTC---TCGACCTCAAGAGTTATGGACTTGCCAGTTAGGGTT 30141
Query 288457 TTGACGAATATCTGCAT 288473
||||| || || |||||
Sbjct 30142 TTGACAAAAATTTGCAT 30158
>seq1360
Length=99280
Score = 127 bits (140), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | ||| || || |||| || || || ||||| || |||||||||
Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || |||||||| | |||||||| ||||| ||||||||||| || ||||||
Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTG---GTCTGGG 35206
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || || ||||| || | ||||| || || || | || |||||
Sbjct 35207 GGAATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCA 35266
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || |||||||| || || || ||||||||||||||
Sbjct 35267 ACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 35316
>seq319
Length=213347
Score = 107 bits (118), Expect = 5e-18
Identities = 154/216 (71%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| || || |||| ||| || || ||||| || ||||||||||| || || || ||
Sbjct 180525 AGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 180466
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | || ||||| || ||||| || | || || |||||| |||||||| ||
Sbjct 180465 TCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGG---TCTGGGGGGATTCCTTCCTTG 180409
Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438
|| || ||||| || || ||||| || || | ||| ||| |||||||| |||||
Sbjct 180408 TCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATT 180349
Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| || || || || ||||| || |||||||||
Sbjct 180348 GTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCATT 180313
Score = 98.7 bits (108), Expect = 2e-15
Identities = 142/198 (72%), Gaps = 12/198 (6%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| || || || || || | ||| ||||| | || || || || ||
Sbjct 181188 TCCTTCTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAA 181129
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| | ||| || |||||| || ||||| || ||||| || ||||| || ||
Sbjct 181128 ATCAACCTCTGCTGG---TCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACA 181072
Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || | || |||| || || ||||| ||||| ||||| ||||||| |||
Sbjct 181071 TTGTCAATGGTGTCCGAGCTC---TCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTC 181015
Query 288457 TTGACGAATATCTGCATT 288474
|||||||| |||||||||
Sbjct 181014 TTGACGAAAATCTGCATT 180997
Score = 96.9 bits (106), Expect = 8e-15
Identities = 141/197 (72%), Gaps = 12/197 (6%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||| || || || || ||||| |||| |||||||| ||||||
Sbjct 180276 TCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAAG 180217
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| | || || |||||| || ||||| || || ||||| || | || ||
Sbjct 180216 ATCAGCCTTTGCTG---GTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTGACA 180160
Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || | ||| ||| || || ||||| ||||| ||||| || || || |||
Sbjct 180159 TTGTCAATGGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTC 180103
Query 288457 TTGACGAATATCTGCAT 288473
|| ||||| || |||||
Sbjct 180102 TTAACGAAGATTTGCAT 180086
>seq51
Length=574565
Score = 102 bits (112), Expect = 2e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || |||||||| || || || || || || || | || || || || ||
Sbjct 463901 TCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAA 463842
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || |||||| ||||||||||||||||| |||| ||||| ||
Sbjct 463841 ATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTC 463782
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | ||| ||||| | ||||||||||| || || || ||||||||
Sbjct 463781 TCAATGGTGTCAGAAGTTTCGACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACA 463722
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 463721 AAGATCTGCAT 463711
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/194 (70%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || || || || | || || || || || ||||| || || || |||
Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || | ||| || |||||| || || || || ||||| || || | |||||
Sbjct 464525 ATGAGCCTCTGCTGG---TCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACA 464469
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| | || || ||||| ||||| ||||||||||| || |||||
Sbjct 464468 TTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTC 464409
Query 288460 ACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 464408 ACAAAGATCTGCAT 464395
>seq355
Length=215899
Score = 100 bits (110), Expect = 7e-16
Identities = 142/197 (72%), Gaps = 12/197 (6%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || || || ||||| || ||||| | || ||||| || |||
Sbjct 204574 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAG 204515
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| | ||| || |||||| || ||||| || || || ||||| | ||| |||
Sbjct 204514 ATCAACCTCTGCTGG---TCTGGGGGAATACCTTCCTTGTCTTGAATTTTTGTTTTGACG 204458
Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || |||| || ||| || ||||| || ||||| ||||||||||| || |||
Sbjct 204457 TTATCAATAGTGTCAGAACTC---TCAACTTCAAGGGTGATAGTCTTCCCGGTGAGGGTC 204401
Query 288457 TTGACGAATATCTGCAT 288473
|| || || ||||||||
Sbjct 204400 TTAACAAAAATCTGCAT 204384
Score = 98.7 bits (108), Expect = 2e-15
Identities = 142/198 (72%), Gaps = 12/198 (6%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || ||||| ||||| |||||||| | || || || | || ||||| || ||
Sbjct 204347 TTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCCAGCTGCTTTCCAGCAAA 204288
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||||||||| || |||||| ||||| || ||||| || || |||| || ||
Sbjct 204287 GATCAGACGCTGCTG---GTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAAC 204231
Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455
|| || || | || ||| || || ||||| || || || || ||||| |||||
Sbjct 204230 ATTGTCGATGGTGTCAAAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGT 204174
Query 288456 CTTGACGAATATCTGCAT 288473
||| || || || |||||
Sbjct 204173 CTTAACAAAGATTTGCAT 204156
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
||||| ||||| | ||| || || || || | || || || || ||||| || ||
Sbjct 205051 AGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCC 204992
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| | || ||||| || |||||||| | |||||| | || || ||||| |||||
Sbjct 204991 TCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCT 204932
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
|| ||||| | ||| || || || || | ||| ||| || || || ||||| |||
Sbjct 204931 TGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTC 204872
Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || ||||| || || ||||||||
Sbjct 204871 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840
Score = 89.7 bits (98), Expect = 1e-12
Identities = 140/197 (71%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||||||||| ||||| || || || | || || || | || || ||||| |||
Sbjct 205258 TCCTTTTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAG 205199
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| | | || ||| |||||| || || || ||||| || || || || || ||
Sbjct 205198 ATTAACCTTTGCTGA---TCTGGGGGAATGCCCTCCTTATCTTGAATCTTTGCCTTGACA 205142
Query 288400 TTTTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
|| || || | || | | ||| || || | |||||||||||||| |||| |||||
Sbjct 205141 TTGTCAATGGTGTC--TGAACTCTCGACCTCCAAAGTGATCGTCTTCCCAGTCAAAGTCT 205084
Query 288458 TGACGAATATCTGCATT 288474
|||||||||| ||||||
Sbjct 205083 TGACGAATATTTGCATT 205067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179485149822244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |