Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 134 3e-26 seq1360 127 5e-24 seq319 107 5e-18 seq51 102 2e-16 seq355 100 7e-16 >seq6 Length=1196388 Score = 134 bits (148), Expect = 3e-26 Identities = 171/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| |||||| || ||||| ||||| || Sbjct 28336 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCTTTCTGAATATTGTAGTCAGCC 28395 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || | ||| || ||||| ||||| || | ||| || || ||| Sbjct 28396 AAGGTGCGTCCATCCTCGAGTTGCTTCCCTGCAAAGATTAGTCTCTGCTGG---TCCGGG 28452 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || |||||||||||||| | |||||| || || | || ||| |||| Sbjct 28453 GGAATCCCCTCCTTATCCTGGATTTTAGTTTTCACATTATCGACAGTATCTGAGCTC--- 28509 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||| |||| ||||||||| || |||||||| Sbjct 28510 TCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 28562 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || || || || || || || | ||||| || || ||| Sbjct 29968 TCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAG 30027 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| |||||||||||||| || ||||| | ||||| Sbjct 30028 ATCAGACGCTGCTG---ATCTGGGGGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACA 30084 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || || || || || | ||| || || || || Sbjct 30085 TTATCAATCGTATCAGAACTC---TCGACCTCAAGAGTTATGGACTTGCCAGTTAGGGTT 30141 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || || ||||| Sbjct 30142 TTGACAAAAATTTGCAT 30158 >seq1360 Length=99280 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || || |||| || || || ||||| || ||||||||| Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||||| ||||| ||||||||||| || |||||| Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTG---GTCTGGG 35206 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||| || | ||||| || || || | || ||||| Sbjct 35207 GGAATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCA 35266 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || |||||||| || || || |||||||||||||| Sbjct 35267 ACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 35316 >seq319 Length=213347 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||||||||| || || || || Sbjct 180525 AGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 180466 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || ||||| || ||||| || | || || |||||| |||||||| || Sbjct 180465 TCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGG---TCTGGGGGGATTCCTTCCTTG 180409 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || ||||| || || ||||| || || | ||| ||| |||||||| ||||| Sbjct 180408 TCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATT 180349 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || ||||| || ||||||||| Sbjct 180348 GTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCATT 180313 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || || | ||| ||||| | || || || || || Sbjct 181188 TCCTTCTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAA 181129 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| || ||||| || ||||| || ||||| || || Sbjct 181128 ATCAACCTCTGCTGG---TCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACA 181072 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || ||||| ||||| ||||| ||||||| ||| Sbjct 181071 TTGTCAATGGTGTCCGAGCTC---TCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTC 181015 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| ||||||||| Sbjct 181014 TTGACGAAAATCTGCATT 180997 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| || || || || ||||| |||| |||||||| |||||| Sbjct 180276 TCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAAG 180217 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || |||||| || ||||| || || ||||| || | || || Sbjct 180216 ATCAGCCTTTGCTG---GTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTGACA 180160 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| ||||| ||||| || || || ||| Sbjct 180159 TTGTCAATGGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTC 180103 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 180102 TTAACGAAGATTTGCAT 180086 >seq51 Length=574565 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| || || || || || || || | || || || || || Sbjct 463901 TCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAA 463842 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || |||||| ||||||||||||||||| |||| ||||| || Sbjct 463841 ATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTC 463782 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| | ||||||||||| || || || |||||||| Sbjct 463781 TCAATGGTGTCAGAAGTTTCGACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACA 463722 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 463721 AAGATCTGCAT 463711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || || || || | || || || || || ||||| || || || ||| Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || || ||||| || || | ||||| Sbjct 464525 ATGAGCCTCTGCTGG---TCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACA 464469 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || ||||| ||||| ||||||||||| || ||||| Sbjct 464468 TTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTC 464409 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 464408 ACAAAGATCTGCAT 464395 >seq355 Length=215899 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || ||||| || ||||| | || ||||| || ||| Sbjct 204574 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAG 204515 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| || ||||| || || || ||||| | ||| ||| Sbjct 204514 ATCAACCTCTGCTGG---TCTGGGGGAATACCTTCCTTGTCTTGAATTTTTGTTTTGACG 204458 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| || ||| || ||||| || ||||| ||||||||||| || ||| Sbjct 204457 TTATCAATAGTGTCAGAACTC---TCAACTTCAAGGGTGATAGTCTTCCCGGTGAGGGTC 204401 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 204400 TTAACAAAAATCTGCAT 204384 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| |||||||| | || || || | || ||||| || || Sbjct 204347 TTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCCAGCTGCTTTCCAGCAAA 204288 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || |||||| ||||| || ||||| || || |||| || || Sbjct 204287 GATCAGACGCTGCTG---GTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAAC 204231 Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || ||| || || ||||| || || || || ||||| ||||| Sbjct 204230 ATTGTCGATGGTGTCAAAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGT 204174 Query 288456 CTTGACGAATATCTGCAT 288473 ||| || || || ||||| Sbjct 204173 CTTAACAAAGATTTGCAT 204156 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||| | ||| || || || || | || || || || ||||| || || Sbjct 205051 AGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCC 204992 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| || |||||||| | |||||| | || || ||||| ||||| Sbjct 204991 TCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCT 204932 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || ||||| | ||| || || || || | ||| ||| || || || ||||| ||| Sbjct 204931 TGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTC 204872 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| || || |||||||| Sbjct 204871 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| ||||| || || || | || || || | || || ||||| ||| Sbjct 205258 TCCTTTTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAG 205199 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | || ||| |||||| || || || ||||| || || || || || || Sbjct 205198 ATTAACCTTTGCTGA---TCTGGGGGAATGCCCTCCTTATCTTGAATCTTTGCCTTGACA 205142 Query 288400 TTTTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 || || || | || | | ||| || || | |||||||||||||| |||| ||||| Sbjct 205141 TTGTCAATGGTGTC--TGAACTCTCGACCTCCAAAGTGATCGTCTTCCCAGTCAAAGTCT 205084 Query 288458 TGACGAATATCTGCATT 288474 |||||||||| |||||| Sbjct 205083 TGACGAATATTTGCATT 205067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179485149822244