Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq51 131 2e-25 seq338 111 2e-19 seq6 111 2e-19 seq319 104 3e-17 seq355 102 9e-17 seq1360 96.9 4e-15 >seq51 Length=574565 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | || || || | ||| ||||||||| || ||||| ||||| Sbjct 463710 ACCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 463651 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | ||||| | ||||||||||||||| ||||| | ||||||||| | ||| Sbjct 463650 TAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGG 463591 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||| ||| ||| |||| || |||| || | | ||||| | |||| Sbjct 463590 GATACCCTCCTTATCC-TGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCA 463532 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 463531 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || || | ||||| ||||| || ||||| ||||||||||||||||| Sbjct 464166 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 464107 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | ||||| | |||||| || || || || || | ||||||||| | ||| Sbjct 464106 CAATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 464047 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTC---GCTCGATT 42156 | | |||||||||| ||| | ||||| | | || | | | ||||| ||| || Sbjct 464046 AATTCCCTCCTTGTCC-TGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCT---TT 463991 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||||||||| || || || ||||| || || || ||||| Sbjct 463990 CAACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||||||||||| || || | || || | ||||| ||||| || Sbjct 464586 CTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAA 464527 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| | ||||||||| | || | | |||||||||| ||| | || || || | Sbjct 464526 GATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC-TGAATCTTAGTCTTCACAT 464468 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || || | || || |||| ||||| || || || || || ||||| | Sbjct 464467 TCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCA 464408 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 464407 CAAAGATCTGCAT 464395 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||||| |||| || |||||||| || ||||||||||| Sbjct 464394 ACCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGC 464335 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || |||||||| ||||| || || | | ||||||||| | ||| Sbjct 464334 CAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGG 464275 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | || |||||| | | ||| | || || | | | | || ||| || || ||| Sbjct 464274 AATGCCCTCCTTAT-CTTGAATCTTCGTCTTCACATTGTCA-ATTGTATCT-GAGCTTTC 464218 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||||| || || || ||||| || || || ||||| Sbjct 464217 AACTTCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167 >seq338 Length=211836 Score = 111 bits (122), Expect = 2e-19 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || ||||| || | ||| || || ||||| || ||||| Sbjct 171298 CCTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAG 171357 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||| ||||| || |||| | | | || || ||||| |||| |||| | |||| | Sbjct 171358 ATGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTC-ATGAATTTTAGCCTTGACATT 171416 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | ||||| || ||||| || || | ||||||||||| ||||| || || || || Sbjct 171417 GTTGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 171476 Query 42197 AAAGATTTGCATTTT 42211 ||| ||||||||||| Sbjct 171477 AAATATTTGCATTTT 171491 >seq6 Length=1196388 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || |||| |||||| || | || ||||||||| ||||||||||| || Sbjct 28792 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 28851 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | ||||| |||||||| || || || || | | |||||||| | || Sbjct 28852 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 28911 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| | || | ||||| | | | ||||| |||| || Sbjct 28912 ATGCCTTCCTTGTCC-TGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTC---TC 28967 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | |||||||| || || || | ||||| ||||| ||||||||| Sbjct 28968 AACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCATT 29019 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| ||||| || | ||| | ||| | || ||||| || |||||||||||||| Sbjct 29247 ACCTCCCCTTAATCGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATATTGTAATCAGC 29306 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| ||| | || || |||||||| ||||| || || | | |||||| || | || Sbjct 29307 AAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 29366 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||||| | ||| |||| || | | | | | | | ||||| |||| | Sbjct 29367 GATTCCCTCCTTGT-CTTGAATTTTGGTCTTAACATTGTCAATAGTGTCGGAGCTC---T 29422 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | |||||||| || || || | ||||| ||||| |||||||| Sbjct 29423 CAACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29474 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | |||||| || | || ||||||||| ||||||||||| || Sbjct 28564 CCACCTCTTAAACGGAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCA 28623 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | || || |||||||| || ||||| || | | |||||| || | || Sbjct 28624 AGGGTCCTCCCATCCTCAAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGATCAGGGGGA 28683 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || |||||||||| ||| || || | | | | ||||| |||| || Sbjct 28684 ATGCCCTCCTTGTCCTGGATCTTAGTCTTTACATTATCAATAGTGTCTGAGCTC---TCA 28740 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || | ||||| ||||| || ||||| Sbjct 28741 ACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTAACAAAAATCTGCAT 28790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || ||||| || | ||| | ||| | || |||||| || || ||||||||||| Sbjct 29703 ACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 29762 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| ||||| || || | | |||||| || | || Sbjct 29763 AAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 29822 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | || |||||| ||| | || || | | | | | | || ||||| ||| || Sbjct 29823 GATTCCTTCTTTGTCC-TGAATCTTGGTCTTAACATTGTCGACAGTGTCAGAGCT---TT 29878 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | || || ||||| || || | ||||||||||||||||||||| Sbjct 29879 CAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCATT 29931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| || | || | ||| | || |||||| || |||||||||||||| Sbjct 29020 CCACCTCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCAGCA 29079 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| ||| | || || |||||||| ||||| || || | | |||||| || | || Sbjct 29080 AGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 29139 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | |||||||| | ||| |||| || | | | | | | | ||||| |||| || Sbjct 29140 ATTCCCTCCTTGT-CTTGAATTTTGGTCTTAACATTGTCAATAGTGTCGGAGCTC---TC 29195 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || || || |||| || || ||||| |||||||| Sbjct 29196 AACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCACAAAAATTTGCAT 29246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || ||||| || | || | ||| | || |||||| || || ||||||||||| Sbjct 29475 ACCACCCCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 29534 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| ||||| || || | | |||||| || | || Sbjct 29535 AAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 29594 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||| |||||| ||| | || || | | | | | | | ||||| |||| | Sbjct 29595 AATTCCCTCTTTGTCC-TGAATCTTAGTCTTAACATTGTCAATAGTGTCTGAGCTC---T 29650 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | |||||||| || || || | ||||| ||||| |||||||| Sbjct 29651 CAACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29702 >seq319 Length=213347 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | ||||||||| | ||| |||||| || || ||||| |||||| Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||||||||||||||| || | | ||||||||| | || Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| | || || | | | | | | | ||||| |||| || Sbjct 180876 ATACCTTCCTTGTCC-TGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTC---TC 180821 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || || ||||| || || || ||||| Sbjct 180820 AACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | |||||| || | || |||||| || ||||||||||| || Sbjct 181224 CCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 181165 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 181164 AGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 181105 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| | || | |||| | | | ||||| |||| || Sbjct 181104 ATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTC---TC 181049 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || |||| |||||||| || || || | ||||| || || || |||||| Sbjct 181048 AACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 180997 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| || || ||| | || || |||||||||||||| || Sbjct 181417 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAA 181358 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 181357 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 181298 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| ||||| || | ||||| Sbjct 181297 ATCAATAGTGTCCGAGCTC---TCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTT 181241 Query 42194 TACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 181240 CACAAAAATCTGCATT 181225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| ||||| || || || |||| |||||||| || || ||||| Sbjct 180277 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAA 180218 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||||| | || | | |||||||| ||| || |||| | Sbjct 180217 GATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 180158 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| ||| || || |||| |||||||| || || || || ||||| Sbjct 180157 GTCAATGGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTT 180101 Query 42194 TACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 180100 AACGAAGATTTGCAT 180086 >seq355 Length=215899 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | || | ||| | || |||||| ||||| |||||||||| Sbjct 205066 CCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCA 205007 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| ||||| || || |||| ||| ||||| | || Sbjct 205006 AGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGA 204947 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| | | ||| |||| | ||||| | | | |||||| ||| || Sbjct 204946 ATGCCTTCCTTAT-CTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 204888 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || ||||| |||||||| ||||| Sbjct 204887 CTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||||||||| | |||||| || | ||| ||||||||| |||||||| ||||| Sbjct 205294 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 205235 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | || || |||||||| || || || || | | ||||| || | || Sbjct 205234 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGA 205175 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || |||||| | | ||| | |||| |||| | | | ||||| ||| || Sbjct 205174 ATGCCCTCCTTAT-CTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTC---TC 205119 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | ||||| || || || || | ||||| || || ||||||||| Sbjct 205118 GACCTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCATT 205067 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || ||||||||||| ||||| || || | | || || |||||||| ||||| || Sbjct 204346 TCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCCAGCTGCTTTCCAGCAAAG 204287 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | |||||| | | ||| | || || | | | | Sbjct 204286 ATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTAT-CTTGAATCTTCGTCTTAACATT 204228 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| ||| || || |||| || |||||||| || || || ||||| Sbjct 204227 GTCGATGGTGTCAAAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCTT 204171 Query 42194 TACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 204170 AACAAAGATTTGCAT 204156 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||| ||| | |||| || | || |||||| || || ||||||||||| Sbjct 204838 CCACCTCTTAGACGGAGAACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 204779 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || || || || | | ||||||||| | || Sbjct 204778 AGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 204719 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||| |||||| ||| | | | | ||||| ||| ||| Sbjct 204718 ATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTATCAATAGTGTCAGAGCT---TTCA 204662 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || |||||||||||||| ||||| Sbjct 204661 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTTACAAAGATCTGCAT 204612 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || |||| ||| ||| | || || | |||||||||||| || Sbjct 205486 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCAGCAAAA 205427 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || | | ||||||||| | ||| | | ||||||||| || | || || |||| | Sbjct 205426 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCC-TGTATCTTAGTCTTGACATT 205368 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || || |||| || || || | ||||||||||| || || | || || Sbjct 205367 ATCGATAGTATCTGAGCTC---TCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTTTT 205311 Query 42194 TACAAAGATTTGCATT 42209 ||||| ||||||||| Sbjct 205310 AACAAATATTTGCATT 205295 >seq1360 Length=99280 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||| || | || |||||| || || ||||| || || Sbjct 35089 ACCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 35148 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| |||| || ||||| || || |||||||| || ||||||||||| | || Sbjct 35149 GAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGG 35208 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| || || | | | | |||||| ||||| || Sbjct 35209 AATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAAC 35268 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 || | || |||||||| || ||||| || || || || || ||||| |||| Sbjct 35269 CTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTTCA 35321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543136763788320