Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1427 111 2e-19 seq319 102 8e-17 seq2834 100 3e-16 seq338 96.9 3e-15 seq51 91.5 1e-13 seq6 91.5 1e-13 seq63 89.7 5e-13 seq1360 87.8 2e-12 >seq1427 Length=108667 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| || |||||||||||| Sbjct 17827 CCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 17768 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || ||||| ||||| |||| |||| ||||| |||||||| || || Sbjct 17767 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 17708 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || ||| | |||| || | ||| |||| || || || Sbjct 17707 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTG-TCGATGGTATCGGAGGATTCGAC 17649 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | |||||||| || || ||||| || || |||||||| Sbjct 17648 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601 >seq319 Length=213347 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || ||||| | | |||||||| || ||||||||||| | Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||| || ||||| | | || | | ||| ||||| || || Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || || ||| |||| || | |||||||| ||| | Sbjct 180876 ATACCTTCCTTGTC-CTGAATCTTGGTCTTAACATTG-TCAATGGTGTCGGAGCTCTCAA 180819 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || || || |||||||| Sbjct 180818 CCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||||||||||||||||||||| ||| | || || |||||| || ||||| ||| Sbjct 180281 TTGACTCCTTTTGAATGTTGTAGTCAGCT-AGGGTTCGGCCGTCCTCTAGCTGTTTTCCG 180223 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTT 138536 | |||| || | || ||||| || || || ||||| ||||| ||| || | || Sbjct 180222 GCGAAGATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTG 180163 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | |||||||| ||| ||||||| || | || || ||||| || || Sbjct 180162 ACATTG-TCAATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGT 180104 Query 138597 TTTTACAAAAATCTGCAT 138614 || || || || ||||| Sbjct 180103 CTTAACGAAGATTTGCAT 180086 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| | Sbjct 180507 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCA 180448 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | || ||||| || || || ||||| ||||| ||| |||| | || | Sbjct 180447 AAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTC-TTGAATTTTGGCCTTGAC 180389 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| || || |||| || | || || || || || |||| Sbjct 180388 GTTG-TCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTT 180330 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 180329 TGACAAAGATCTGCAT 180314 >seq2834 Length=64598 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | ||| || || ||||| ||||| |||| Sbjct 903 TTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGG 844 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || || |||||||| || || || ||||||||||| ||| || ||| | Sbjct 843 CGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCA 784 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||||| | || || || || | || | |||||||| || || ||| Sbjct 783 CATTG-TCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTT 725 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 724 TTCACGAAGATCTGCAT 708 >seq338 Length=211836 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||| ||| | |||||| ||| || ||||| || |||| || Sbjct 171298 CCTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAG 171357 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATT 138541 || || |||||||| || || | || ||||||||||| ||| |||| | || ||| Sbjct 171358 ATGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTC-ATGAATTTTAGCCTTGACATT 171416 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | |||||| | || || ||||| | || | |||||||| || |||||||| | Sbjct 171417 GTT-GATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCA 171475 Query 138602 CAAAAATCTGCAT 138614 |||| || ||||| Sbjct 171476 CAAATATTTGCAT 171488 >seq51 Length=574565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || | || ||| | ||||| || | | ||||||||||| ||||||||||| ||| Sbjct 463709 CCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT 463650 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | || || | || ||||| | |||| || | ||| |||||||| | Sbjct 463649 -AGAGTTCTGCCA-TCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTG 463592 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564 | ||||| || || || ||| |||| || || | | || | ||||| | | |||| Sbjct 463591 GGATACCCTCCTTATCC-TGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCC 463533 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || || |||||||| ||||| ||||| || ||||| Sbjct 463532 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483 >seq6 Length=1196388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||||||||| || |||||||| || | |||||| |||||||| || Sbjct 29727 ATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTG 29786 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || || | | |||| | | ||| || ||||| || || ||||||||||| ||| | | Sbjct 29787 CTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCT 29845 Query 138531 TTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | || ||| |||| || || ||||| | || ||||| | || | ||||| || Sbjct 29846 TGGTCTTAACATTG-TCGACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCT 29904 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| |||||||| || ||||| Sbjct 29905 GTCAAAGTCTTTACAAAGATTTGCAT 29930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||| |||||||| || || || ||||||||||| || || | | Sbjct 28369 GATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCTGCA 28428 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 ||||||| | ||| |||||||| || || || || || || |||||| ||| | Sbjct 28429 AAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTCACA 28488 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || || || || | ||| ||||| | || | || || ||||||| ||| || Sbjct 28489 TTATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTG 28548 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 28549 ACAAAAATCTGCAT 28562 >seq63 Length=488123 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385 ||||| || ||| ||||| || ||| ||||| ||||| | ||||||| | |||| Sbjct 277141 AAGAGAGTTGGAGAAGCGTGGGTGAACCACCTTTGGGACATCAAGTGGTACGTCTTGATG 277200 Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445 || |||||||||||| ||| || || | || || | ||| |||||||||||||| Sbjct 277201 GCCGATTCGATATCATCCTTGTGGATCCCAACAGCAACCCTCATCAGCATGTGCTGCGGT 277260 Query 154446 CGTTCGGCGAC--TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAAC 154503 | || | || || ||| || ||||| ||||||| | |||||||||||| ||| Sbjct 277261 CTCTCCACAACCGTCCCTTG--AACCTTCAGGAGATATGATCTCTCGAGGGTTTTGAAAC 277318 Query 154504 CGAAATACTTGTATTCAAAATC 154525 | || | | || ||||| || Sbjct 277319 CAAAGAAATCATAGTCAAAGTC 277340 >seq1360 Length=99280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||| ||||| ||||| |||| Sbjct 35123 GACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCG 35182 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 | || |||||||| ||||| || || || ||||| ||||| ||| || | || | Sbjct 35183 AATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTCACA 35242 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | || || ||||| | || | ||||| || || || ||||| Sbjct 35243 TTG-TCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 35301 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 35302 CACGAATATCTGCAT 35316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496192935670560