Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq843 120 3e-22
seq355 104 2e-17
seq319 104 2e-17
seq6 102 7e-17
seq51 98.7 9e-16
seq2834 89.7 5e-13
seq1360 87.8 2e-12
seq1427 84.2 2e-11
>seq843
Length=130910
Score = 120 bits (132), Expect = 3e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| ||||| ||||| |||||||| || || || ||||| | ||| | ||| ||
Sbjct 120339 CACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 120280
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||||||||| || || | || || ||||| || || || || ||||||||||| |||||
Sbjct 120279 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 120220
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || ||||| || | ||||| || || |||||||| || || | |||||
Sbjct 120219 GATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTT 120160
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| ||||| || ||||| ||||||
Sbjct 120159 CCCAGTTAGGGTTTTCACGAAAATCTGCATC 120129
>seq355
Length=215899
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || ||||| || || ||||| || || || ||| | ||| |||
Sbjct 204364 ACAAGGTGGAGGGTCGATTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCC 204305
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || ||||| || | |||| || |||||||| || ||||| || || |||||||||
Sbjct 204304 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGA 204245
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
| | || || | | | | || | |||||| || ||| || |||||||| | |||||
Sbjct 204244 A-TCTTCGTCTTAACATTGTCGATGGTGTCAAAACTCTCAACCTCGAGAGTTATGGTTTT 204186
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| ||||| || ||||| |||||||||
Sbjct 204185 TCCGGTAAGAGTCTTAACAAAGATTTGCATC 204155
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || ||||| | ||| ||| ||
Sbjct 204592 ACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCA 204533
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || ||||| || | ||||| | |||||||| || ||||| ||||| || ||||||
Sbjct 204532 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 204473
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| ||||| || | || | ||||| ||| ||| ||||| || || | || ||
Sbjct 204472 ATTTTTGTTTTGA-CGTTATCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTT 204414
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || || |||||||| ||||||
Sbjct 204413 CCCGGTGAGGGTCTTAACAAAAATCTGCATC 204383
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || |||||||||||||| || || | ||| | ||| || | ||
Sbjct 205270 TGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGC 205211
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || || | |||||| || || |||||||| || ||||||||||| |||
Sbjct 205210 TTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGAATGCCCTCCTTATCTTGAATCTTT 205151
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | |||||| ||| |||||| || | ||| | ||| || || ||
Sbjct 205150 GCCTTGACATTGTCAATGGTGTCTGAACTCTCGACCTCCAAAGTGATCGTCTTCCCAGTC 205091
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| ||| || || || ||||||||
Sbjct 205090 AAAGTCTTGACGAATATTTGCAT 205068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| |||||||| ||||| || || | ||||| | ||| ||| ||
Sbjct 205048 ACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCA 204989
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || ||||| || | |||| || || ||||| || ||||||||||| |||||||||
Sbjct 204988 AGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGA 204929
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||||| || | ||||||||| || || || || || | || ||
Sbjct 204928 ATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTC 204869
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || || ||||| || |||||
Sbjct 204868 CCGGTGAGGGTCTTCACAAAGATCTGCAT 204840
>seq319
Length=213347
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | | ||| || || || || || ||||| ||||| || || |||
Sbjct 180543 ATTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCG 180484
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| |||| ||| || | || ||||| || | || | | ||||||||| ||
Sbjct 180483 GCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGG 180424
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| || ||||||||||| |||| || | || | ||||||||| ||
Sbjct 180423 GGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTC 180365
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||| || | || || || ||||| ||||| ||||| || |||||
Sbjct 180364 GACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314
>seq6
Length=1196388
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | ||| | || || || || ||||| ||||| ||||| ||
Sbjct 29929 ATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCT 29988
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| ||| || | ||||| || || | |||| || ||||| || ||
Sbjct 29989 GCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGG 30048
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| |||||||||||||||||||| || | || | || || ||| ||||
Sbjct 30049 GGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || ||||| | | ||||| ||||| ||||| |||||||||||||||
Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCATC 30159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || |||||||||||||| ||||| | ||| | ||| || | ||
Sbjct 28816 TGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCATCAAGCTGC 28875
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | ||||| | |||||||||||| ||||||||||| || || ||||| ||
Sbjct 28876 TTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTG 28935
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| || | ||||| || ||| || || | ||| | || || || ||
Sbjct 28936 GCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCTGTC 28995
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| ||| || ||||||||||||||
Sbjct 28996 AAAGTCTTAACAAAAATTTGCAT 29018
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || ||||| ||||| |||||||| ||||| | || ||| ||
Sbjct 29038 ACAAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCG 29097
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || || | ||||| | ||||| || || || || || || || ||||||
Sbjct 29098 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGA 29157
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||||| || | | | | || | |||||||| ||| || || | ||||| || ||
Sbjct 29158 ATTTTG-GTCTTAACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTT 29216
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||| |||||| ||||||||||||||
Sbjct 29217 CCCTGTTAAAGTTTTCACAAAAATTTGCAT 29246
>seq51
Length=574565
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190
|||| || || || || ||||||||||| || || || ||| | ||| | ||| ||
Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT-AGAGTTCTGCCATCATC 463633
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||| || || || ||| | || | | ||||||||||| || || || || ||||| ||
Sbjct 463632 CAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 463573
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| |||| || | ||||| |||| ||| || ||||| || | || ||
Sbjct 463572 AATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTT 463513
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || || ||||| ||||| |||||||||
Sbjct 463512 GCCAGTCAGGGTTTTCACAAAGATTTGCATC 463482
>seq2834
Length=64598
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || ||||| ||||| ||||| || || ||| | || ||| ||
Sbjct 916 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCG 857
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||||| ||| | || | ||||| ||||| || || ||||||||||| |||||
Sbjct 856 AGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGG 797
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || ||| | || | ||||| || || |||||||| || || | |||||
Sbjct 796 ATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTA 737
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| ||||| || || || |||||
Sbjct 736 CCCGTTAGGGTTTTCACGAAGATCTGCAT 708
>seq1360
Length=99280
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| || || || || || ||||| ||||| || || ||| || || || ||
Sbjct 35107 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTC 35166
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| |||||||| ||| |||||| || |||||||| || ||||||||||| || |||||
Sbjct 35167 GAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTG 35226
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || || | || | ||||| || || || || || || || | |||||
Sbjct 35227 GATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTT 35286
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||||| ||||| || || || ||||||
Sbjct 35287 CCCGGTTAGGGTTTTCACGAATATCTGCATC 35317
>seq1427
Length=108667
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || ||| | || ||| ||
Sbjct 17809 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCG 17750
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||||| ||| | || | ||||| ||||| || || ||||||||||| || ||
Sbjct 17749 AGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGG 17690
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || ||||| || | ||| ||||| || ||||| || || || | |||||
Sbjct 17689 ATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTA 17630
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| ||||| || || || |||||
Sbjct 17629 CCCGTTAGGGTTTTCACGAAGATCTGCAT 17601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451939930852080
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