Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq843 120 3e-22 seq355 104 2e-17 seq319 104 2e-17 seq6 102 7e-17 seq51 98.7 9e-16 seq2834 89.7 5e-13 seq1360 87.8 2e-12 seq1427 84.2 2e-11 >seq843 Length=130910 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| ||||| |||||||| || || || ||||| | ||| | ||| || Sbjct 120339 CACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 120280 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||||||| || || | || || ||||| || || || || ||||||||||| ||||| Sbjct 120279 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 120220 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | ||||| || || |||||||| || || | ||||| Sbjct 120219 GATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTT 120160 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || ||||| |||||| Sbjct 120159 CCCAGTTAGGGTTTTCACGAAAATCTGCATC 120129 >seq355 Length=215899 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| || || ||||| || || || ||| | ||| ||| Sbjct 204364 ACAAGGTGGAGGGTCGATTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCC 204305 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| || |||||||| || ||||| || || ||||||||| Sbjct 204304 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGA 204245 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || || | | | | || | |||||| || ||| || |||||||| | ||||| Sbjct 204244 A-TCTTCGTCTTAACATTGTCGATGGTGTCAAAACTCTCAACCTCGAGAGTTATGGTTTT 204186 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| || ||||| ||||||||| Sbjct 204185 TCCGGTAAGAGTCTTAACAAAGATTTGCATC 204155 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || ||||| | ||| ||| || Sbjct 204592 ACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCA 204533 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | ||||| | |||||||| || ||||| ||||| || |||||| Sbjct 204532 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 204473 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||||| || | || | ||||| ||| ||| ||||| || || | || || Sbjct 204472 ATTTTTGTTTTGA-CGTTATCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTT 204414 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || |||||||| |||||| Sbjct 204413 CCCGGTGAGGGTCTTAACAAAAATCTGCATC 204383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||||||||| || || | ||| | ||| || | || Sbjct 205270 TGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGC 205211 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || || | |||||| || || |||||||| || ||||||||||| ||| Sbjct 205210 TTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGAATGCCCTCCTTATCTTGAATCTTT 205151 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| ||| |||||| || | ||| | ||| || || || Sbjct 205150 GCCTTGACATTGTCAATGGTGTCTGAACTCTCGACCTCCAAAGTGATCGTCTTCCCAGTC 205091 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || |||||||| Sbjct 205090 AAAGTCTTGACGAATATTTGCAT 205068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| |||||||| ||||| || || | ||||| | ||| ||| || Sbjct 205048 ACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCA 204989 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| || || ||||| || ||||||||||| ||||||||| Sbjct 204988 AGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGA 204929 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | ||||||||| || || || || || | || || Sbjct 204928 ATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTC 204869 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| || ||||| Sbjct 204868 CCGGTGAGGGTCTTCACAAAGATCTGCAT 204840 >seq319 Length=213347 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | ||| || || || || || ||||| ||||| || || ||| Sbjct 180543 ATTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCG 180484 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| || | || ||||| || | || | | ||||||||| || Sbjct 180483 GCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGG 180424 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||||||||| |||| || | || | ||||||||| || Sbjct 180423 GGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTC 180365 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | || || || ||||| ||||| ||||| || ||||| Sbjct 180364 GACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314 >seq6 Length=1196388 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| | || || || || ||||| ||||| ||||| || Sbjct 29929 ATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCT 29988 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | ||||| || || | |||| || ||||| || || Sbjct 29989 GCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGG 30048 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||||||||| || | || | || || ||| |||| Sbjct 30049 GGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | | ||||| ||||| ||||| ||||||||||||||| Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCATC 30159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||||||||| ||||| | ||| | ||| || | || Sbjct 28816 TGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCATCAAGCTGC 28875 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | |||||||||||| ||||||||||| || || ||||| || Sbjct 28876 TTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTG 28935 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| || ||| || || | ||| | || || || || Sbjct 28936 GCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCTGTC 28995 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || |||||||||||||| Sbjct 28996 AAAGTCTTAACAAAAATTTGCAT 29018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| ||||| |||||||| ||||| | || ||| || Sbjct 29038 ACAAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCG 29097 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | ||||| || || || || || || || |||||| Sbjct 29098 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGA 29157 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | | | | || | |||||||| ||| || || | ||||| || || Sbjct 29158 ATTTTG-GTCTTAACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTT 29216 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| |||||| |||||||||||||| Sbjct 29217 CCCTGTTAAAGTTTTCACAAAAATTTGCAT 29246 >seq51 Length=574565 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190 |||| || || || || ||||||||||| || || || ||| | ||| | ||| || Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT-AGAGTTCTGCCATCATC 463633 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || ||| | || | | ||||||||||| || || || || ||||| || Sbjct 463632 CAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 463573 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| |||| || | ||||| |||| ||| || ||||| || | || || Sbjct 463572 AATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTT 463513 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || ||||| ||||| ||||||||| Sbjct 463512 GCCAGTCAGGGTTTTCACAAAGATTTGCATC 463482 >seq2834 Length=64598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||| ||||| || || ||| | || ||| || Sbjct 916 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCG 857 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | ||||| ||||| || || ||||||||||| ||||| Sbjct 856 AGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGG 797 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||||| || || |||||||| || || | ||||| Sbjct 796 ATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTA 737 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || || ||||| Sbjct 736 CCCGTTAGGGTTTTCACGAAGATCTGCAT 708 >seq1360 Length=99280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || ||| || || || || Sbjct 35107 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTC 35166 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||||| ||| |||||| || |||||||| || ||||||||||| || ||||| Sbjct 35167 GAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTG 35226 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | ||||| || || || || || || || | ||||| Sbjct 35227 GATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTT 35286 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| || || || |||||| Sbjct 35287 CCCGGTTAGGGTTTTCACGAATATCTGCATC 35317 >seq1427 Length=108667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| | || ||| || Sbjct 17809 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCG 17750 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | ||||| ||||| || || ||||||||||| || || Sbjct 17749 AGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGG 17690 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||| ||||| || ||||| || || || | ||||| Sbjct 17689 ATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTA 17630 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || || ||||| Sbjct 17629 CCCGTTAGGGTTTTCACGAAGATCTGCAT 17601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451939930852080