Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq71 89.7 6e-13
seq220 87.8 2e-12
seq814 84.2 3e-11
>seq71
Length=458239
Score = 89.7 bits (98), Expect = 6e-13
Identities = 182/268 (68%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAAA 10261
||||||||| || |||| |||| | | | ||||| || | ||| ||| |||||||
Sbjct 140974 TCAGTAAAGATCGCCCTCCTTGTGGGTATGGATTACACAGTCTGATCGCGGG-TAAGAAA 141032
Query 10262 CACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTT 10321
|||| || || | |||| || || || | || |||||||| ||| |||| |
Sbjct 141033 CACACGTGAGCAAATAACCTTTGTCCATTTGATTGTCGTCAAGGAAGGATCCATCGGACT 141092
Query 10322 GATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACG 10381
|||| || || || | ||| | || ||||| | || |||||||| || | ||| |
Sbjct 141093 GATCAACTGTTCCACTTACGAGCTGACCAGCACAGGTTGAGCAGGCACCTGCCCTGCATG 141152
Query 10382 AGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCAC 10441
|||| | ||||| || || ||||| || ||||| || ||||| ||| || |||
Sbjct 141153 AGTAAGGCAAGTCAACCCCAGCCTCTTCCGCTGCATCGAGGATGTAAGCATCATCGGCAG 141212
Query 10442 ACTCAAAAGTAGTTTCAGTTCCATCGGG 10469
|||||| | ||| |||||||| ||
Sbjct 141213 CCTCAAATTCATGTTCTGTTCCATCTGG 141240
>seq220
Length=268034
Score = 87.8 bits (96), Expect = 2e-12
Identities = 167/245 (68%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 10204 CAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACA 10263
|||||| | || ||||| |||| | |||||| | ||| || || |||| | ||
Sbjct 142185 CAGTAA-GCTCCTCCTCCTTGTGAGTCTCAATGGTAACATCACTAACAGGGTAAGCAGCA 142127
Query 10264 CAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGA 10323
|| || |||| | |||||| | |||||||||||||| | ||| |||||||| ||
Sbjct 142126 CAAGTAAGAACCCATCCAGCAGCAATCTGGTCATCATCTAAGAAGGATTGATCAGACTGG 142067
Query 10324 TCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAG 10383
|| | ||||| || | || || || || || || || | ||||| | || |||
Sbjct 142066 TCAAGAGTACCAGACGTAAGCTTACCGGCGCATGAGGAGCACGAGCCAGCCCTACAAGAG 142007
Query 10384 TAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACAC 10443
|| | ||||| ||| | |||||||||||||||| | |||| || || | |||
Sbjct 142006 TAAGGCAAATCAATCCCTACCTCTTCAGCAGCATCCAACACGTACACGTCATCCGGGCAC 141947
Query 10444 TCAAA 10448
|||||
Sbjct 141946 TCAAA 141942
>seq814
Length=133700
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 7712 GTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTG 7771
|| ||||| || || || || ||||| || || | ||||||||| | |||| ||||||
Sbjct 56189 GTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACAAGAGTTG 56248
Query 7772 TTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
||||| ||| ||||| ||||||| | ||| || || || |||||||| |||||
Sbjct 56249 TTGAAACTAGCATATTGAAAGATCAATCAACCGAAATAACCATGAGCAGCTACGAT 56304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622037718081120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |