Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq71 89.7 6e-13 seq220 87.8 2e-12 seq814 84.2 3e-11 >seq71 Length=458239 Score = 89.7 bits (98), Expect = 6e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAAA 10261 ||||||||| || |||| |||| | | | ||||| || | ||| ||| ||||||| Sbjct 140974 TCAGTAAAGATCGCCCTCCTTGTGGGTATGGATTACACAGTCTGATCGCGGG-TAAGAAA 141032 Query 10262 CACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTT 10321 |||| || || | |||| || || || | || |||||||| ||| |||| | Sbjct 141033 CACACGTGAGCAAATAACCTTTGTCCATTTGATTGTCGTCAAGGAAGGATCCATCGGACT 141092 Query 10322 GATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACG 10381 |||| || || || | ||| | || ||||| | || |||||||| || | ||| | Sbjct 141093 GATCAACTGTTCCACTTACGAGCTGACCAGCACAGGTTGAGCAGGCACCTGCCCTGCATG 141152 Query 10382 AGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCAC 10441 |||| | ||||| || || ||||| || ||||| || ||||| ||| || ||| Sbjct 141153 AGTAAGGCAAGTCAACCCCAGCCTCTTCCGCTGCATCGAGGATGTAAGCATCATCGGCAG 141212 Query 10442 ACTCAAAAGTAGTTTCAGTTCCATCGGG 10469 |||||| | ||| |||||||| || Sbjct 141213 CCTCAAATTCATGTTCTGTTCCATCTGG 141240 >seq220 Length=268034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 10204 CAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACA 10263 |||||| | || ||||| |||| | |||||| | ||| || || |||| | || Sbjct 142185 CAGTAA-GCTCCTCCTCCTTGTGAGTCTCAATGGTAACATCACTAACAGGGTAAGCAGCA 142127 Query 10264 CAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGA 10323 || || |||| | |||||| | |||||||||||||| | ||| |||||||| || Sbjct 142126 CAAGTAAGAACCCATCCAGCAGCAATCTGGTCATCATCTAAGAAGGATTGATCAGACTGG 142067 Query 10324 TCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAG 10383 || | ||||| || | || || || || || || || | ||||| | || ||| Sbjct 142066 TCAAGAGTACCAGACGTAAGCTTACCGGCGCATGAGGAGCACGAGCCAGCCCTACAAGAG 142007 Query 10384 TAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACAC 10443 || | ||||| ||| | |||||||||||||||| | |||| || || | ||| Sbjct 142006 TAAGGCAAATCAATCCCTACCTCTTCAGCAGCATCCAACACGTACACGTCATCCGGGCAC 141947 Query 10444 TCAAA 10448 ||||| Sbjct 141946 TCAAA 141942 >seq814 Length=133700 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 7712 GTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTG 7771 || ||||| || || || || ||||| || || | ||||||||| | |||| |||||| Sbjct 56189 GTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACAAGAGTTG 56248 Query 7772 TTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 ||||| ||| ||||| ||||||| | ||| || || || |||||||| ||||| Sbjct 56249 TTGAAACTAGCATATTGAAAGATCAATCAACCGAAATAACCATGAGCAGCTACGAT 56304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622037718081120