Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 1e-18
seq319 89.7 4e-13
seq843 86.0 4e-12
>seq6
Length=1196388
Score = 107 bits (118), Expect = 1e-18
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || || || ||||| || | | ||| |||| || | || ||||| ||||
Sbjct 29740 TCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAG 29799
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAA--TC 39645
|| || | ||||||||||| ||| | ||||||||||| | | | || || |||| |
Sbjct 29800 ATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCTTGGTCTTAACATT 29858
Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705
|||| || ||||| | |||||| || ||||| ||||||||||| || || ||||| |||
Sbjct 29859 GTCG--ACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTT 29916
Query 39706 ACGAAGATCTGCAT 39719
|| ||||| |||||
Sbjct 29917 ACAAAGATTTGCAT 29930
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || ||||| ||||| || | | || |||| || | || ||||| ||||
Sbjct 29056 TCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAG 29115
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646
|| || | ||||||||| | ||| | || || ||||| ||||| |||| | |
Sbjct 29116 ATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTAACATTG 29175
Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
|| || ||||| | ||| || || ||||||||||| || || || ||||||||||| |
Sbjct 29176 TCAATA--GTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCA 29233
Query 39707 CGAAGATCTGCAT 39719
| || || |||||
Sbjct 29234 CAAAAATTTGCAT 29246
>seq319
Length=213347
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || | |||||| || |||||||| | |||| || || || || || || || |||
Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| || | || || || | ||||| || | |||||| || | |||
Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671
| ||||| ||||| | | | || || | | | | | | || |||| | ||| || ||
Sbjct 180876 ATACCTTCCTTGTC-CTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 180818
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||||||||| || || || || | ||| || ||||| ||||||||
Sbjct 180817 CTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770
>seq843
Length=130910
Score = 86.0 bits (94), Expect = 4e-12
Identities = 164/239 (69%), Gaps = 6/239 (3%)
Strand=Plus/Minus
Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542
|||||| | || || || | || || |||| ||| | || ||| || || || ||
Sbjct 120366 AATCATGGTACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTT 120307
Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602
||||| || | | | |||| |||||||||||||| |||| ||||| || || ||
Sbjct 120306 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 120247
Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660
||| | || | |||||||||||| | || || || | || |||| | ||||||
Sbjct 120246 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCG--ATTGTGTCC 120189
Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||| || || | || || ||||| || |||| ||||| ||||| ||||||||
Sbjct 120188 GATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 120130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347322192516734
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |