Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq319 89.7 4e-13 seq843 86.0 4e-12 >seq6 Length=1196388 Score = 107 bits (118), Expect = 1e-18 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||| || | | ||| |||| || | || ||||| |||| Sbjct 29740 TCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAG 29799 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAA--TC 39645 || || | ||||||||||| ||| | ||||||||||| | | | || || |||| | Sbjct 29800 ATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCTTGGTCTTAACATT 29858 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| || ||||| | |||||| || ||||| ||||||||||| || || ||||| ||| Sbjct 29859 GTCG--ACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTT 29916 Query 39706 ACGAAGATCTGCAT 39719 || ||||| ||||| Sbjct 29917 ACAAAGATTTGCAT 29930 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| || | | || |||| || | || ||||| |||| Sbjct 29056 TCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAG 29115 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | ||||||||| | ||| | || || ||||| ||||| |||| | | Sbjct 29116 ATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTAACATTG 29175 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||| | ||| || || ||||||||||| || || || ||||||||||| | Sbjct 29176 TCAATA--GTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCA 29233 Query 39707 CGAAGATCTGCAT 39719 | || || ||||| Sbjct 29234 CAAAAATTTGCAT 29246 >seq319 Length=213347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || |||||||| | |||| || || || || || || || ||| Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || || | ||||| || | |||||| || | ||| Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | ||||| ||||| | | | || || | | | | | | || |||| | ||| || || Sbjct 180876 ATACCTTCCTTGTC-CTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 180818 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || ||||| |||||||| Sbjct 180817 CTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 >seq843 Length=130910 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||| | || || || | || || |||| ||| | || ||| || || || || Sbjct 120366 AATCATGGTACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTT 120307 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 ||||| || | | | |||| |||||||||||||| |||| ||||| || || || Sbjct 120306 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 120247 Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660 ||| | || | |||||||||||| | || || || | || |||| | |||||| Sbjct 120246 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCG--ATTGTGTCC 120189 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||| || || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 120188 GATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 120130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347322192516734