Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1046 123 3e-23 seq370 100 4e-16 seq20 98.7 1e-15 seq1283 82.4 9e-11 >seq1046 Length=115582 Score = 123 bits (136), Expect = 3e-23 Identities = 246/358 (69%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || || | | || ||||| || | |||| ||||| || |||| ||| Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGT---GTTACCCTCA 62639 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | |||||| || | || ||||||| ||||||||| || | Sbjct 62638 AAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCC 62579 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 62578 CCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAA 62519 Query 16095 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| | | ||| ||| ||||| || || || || ||||||||||| Sbjct 62518 GGAGCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAAC 62460 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || || || | || | ||| || | || || || ||| || ||| || | Sbjct 62459 AAACATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 62401 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 |||| || || || |||||||| || || |||||| ||| | || ||| |||| Sbjct 62400 CAATAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACC 62343 >seq370 Length=202669 Score = 100 bits (110), Expect = 4e-16 Identities = 308/467 (66%), Gaps = 16/467 (3%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726 Query 15944 GGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| | |||| || | | | ||| ||||||||||| ||||| | ||| Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 16117 | || |||||||| |||||||| || || ||||| || | ||| | | || || || Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 164552 Query 16118 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 ||| | ||||| ||| || | || |||||||||||||||| ||||||||| | | Sbjct 164551 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 164494 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | ||| | ||| || ||| | ||||| || | || | || | | ||| Sbjct 164493 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 164434 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || || || || ||| | ||||| ||| ||| || || || || | || Sbjct 164433 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 164374 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTC 16342 ||| | ||||| | ||| | ||| ||||||| || | |||||| Sbjct 164373 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327 >seq20 Length=765589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 102165 |||| | || ||| || | ||||| || ||||||||| | ||| ||||| || Sbjct 521946 AAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATG----GT 522001 Query 102166 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | || ||||||||| | | | || ||||| |||||||| || || ||||||||| Sbjct 522002 GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 522061 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || |||||| | || | |||||||| ||||| || | ||||| ||| | |||| Sbjct 522062 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTC 522121 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || |||||||| || || || ||||| || || ||| || ||||| Sbjct 522122 TCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168 >seq1283 Length=103335 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGAT--TTTCGCGAGCGACTTCAAAGA 16122 ||||||||||||||||| || | ||| || ||| || |||| |||| || |||| | Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTT-AGCGGCTGCAAACA 48367 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 16180 |||| | || | | |||| || |||||||||||||||||| |||| | ||| | | Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || || ||| || || || ||| || ||||| |||| ||| || | ||| || || Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485 Query 16241 CGTACCTGG 16249 ||||| || Sbjct 48486 AGTACCAGG 48494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620655511582560