Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1046 123 3e-23
seq370 100 4e-16
seq20 98.7 1e-15
seq1283 82.4 9e-11
>seq1046
Length=115582
Score = 123 bits (136), Expect = 3e-23
Identities = 246/358 (69%), Gaps = 10/358 (3%)
Strand=Plus/Minus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974
||||| || || | | || ||||| || | |||| ||||| || |||| |||
Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGT---GTTACCCTCA 62639
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| ||||||||||| || | |||||| || | || ||||||| ||||||||| || |
Sbjct 62638 AAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCC 62579
Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
|||| || | |||| |||| || |||||||| ||||||| || || |||||
Sbjct 62578 CCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAA 62519
Query 16095 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153
|| |||||| | | ||| ||| ||||| || || || || |||||||||||
Sbjct 62518 GGAGCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAAC 62460
Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212
|||||| || || || | || | ||| || | || || || ||| || ||| || |
Sbjct 62459 AAACATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 62401
Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
|||| || || || |||||||| || || |||||| ||| | || ||| ||||
Sbjct 62400 CAATAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACC 62343
>seq370
Length=202669
Score = 100 bits (110), Expect = 4e-16
Identities = 308/467 (66%), Gaps = 16/467 (3%)
Strand=Plus/Minus
Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943
||||||||| | ||||| | || | || |||||| | |||| | ||| || ||
Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726
Query 15944 GGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | |||| | |||| || | | | ||| ||||||||||| ||||| | |||
Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059
|| ||||| || |||| |||||||| | | | ||| || || | | |||| | |
Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 16117
| || |||||||| |||||||| || || ||||| || | ||| | | || || ||
Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 164552
Query 16118 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175
||| | ||||| ||| || | || |||||||||||||||| ||||||||| | |
Sbjct 164551 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 164494
Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235
|| | ||| | ||| || ||| | ||||| || | || | || | | |||
Sbjct 164493 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 164434
Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295
|| || || || || ||| | ||||| ||| ||| || || || || | ||
Sbjct 164433 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 164374
Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTC 16342
||| | ||||| | ||| | ||| ||||||| || | ||||||
Sbjct 164373 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327
>seq20
Length=765589
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 102165
|||| | || ||| || | ||||| || ||||||||| | ||| ||||| ||
Sbjct 521946 AAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATG----GT 522001
Query 102166 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
| || ||||||||| | | | || ||||| |||||||| || || |||||||||
Sbjct 522002 GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 522061
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
|| |||||| | || | |||||||| ||||| || | ||||| ||| | ||||
Sbjct 522062 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTC 522121
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|| |||||||| || || || ||||| || || ||| || |||||
Sbjct 522122 TCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168
>seq1283
Length=103335
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGAT--TTTCGCGAGCGACTTCAAAGA 16122
||||||||||||||||| || | ||| || ||| || |||| |||| || |||| |
Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTT-AGCGGCTGCAAACA 48367
Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 16180
|||| | || | | |||| || |||||||||||||||||| |||| | ||| | |
Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426
Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|| || ||| || || || ||| || ||||| |||| ||| || | ||| || ||
Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485
Query 16241 CGTACCTGG 16249
||||| ||
Sbjct 48486 AGTACCAGG 48494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620655511582560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |