Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq20 91.5 2e-13 seq1283 84.2 3e-11 seq122 84.2 3e-11 seq59 84.2 3e-11 seq14 84.2 3e-11 >seq20 Length=765589 Score = 91.5 bits (100), Expect = 2e-13 Identities = 336/519 (65%), Gaps = 7/519 (1%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||||||||| || || || || ||||| || |||| | || Sbjct 522169 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACC 522110 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| | || | || || ||||| ||||||| || ||||||||||| ||||| || Sbjct 522109 CGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAAT 522050 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674 || || ||||| || ||||| | | | ||||||||| | | || || | ||| Sbjct 522049 CCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGATTCAGCACCATCAATCCA 521990 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 |||||||| | ||||| || | || |||| ||||| || || ||||| Sbjct 521989 ACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAG 521930 Query 119735 TTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACC 119794 || |||| | ||| || || || | || | || |||||| | ||| Sbjct 521929 ATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGA 521870 Query 119795 ATGAACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCA 119853 |||| ||||| || | || || || |||| || | ||||||||| | || || | Sbjct 521869 GTGAATGTTTTCAATG-GCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAA 521811 Query 119854 -CTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAG 119912 || | ||| || || | || ||| || | ||| || || || ||| | |||||| Sbjct 521810 CCTCCTTCATGAATCTT-CCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAG 521752 Query 119913 AATGCTAAGATGTACTTTATGAATTTCTGTTCAT-TATCGTT--GAGTGTTTTCCAGTCG 119969 || || | ||||| | ||||| | |||||| | | ||| || |||| ||||| Sbjct 521751 AAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGA 521692 Query 119970 TCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 | ||||| || | || || ||||| || |||||| Sbjct 521691 CGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAG 521653 >seq1283 Length=103335 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 41056 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 41111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 41195 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 41250 >seq122 Length=355675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 165907 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 165852 >seq59 Length=543543 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 363631 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 363576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 378947 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 378892 >seq14 Length=1067875 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 248902 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 248847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588893558084400