Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1046 120 4e-22 seq63 100 3e-16 seq370 96.9 4e-15 seq1283 82.4 9e-11 >seq1046 Length=115582 Score = 120 bits (132), Expect = 4e-22 Identities = 241/355 (68%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 62636 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 62635 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 62576 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| || | |||| |||| || |||||||| ||||||| || ||||| || || Sbjct 62575 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 62516 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 62515 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 62456 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || || || | || | ||| || | || || || ||| || ||| || ||||| Sbjct 62455 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 62397 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || || || |||||||| || || |||||| ||| | || ||| ||||| Sbjct 62396 AGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACCC 62342 >seq63 Length=488123 Score = 100 bits (110), Expect = 3e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || ||||||||||| ||||| | ||||| ||||| | |||| Sbjct 277117 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCGTGGGTGAACCACCTTTGG 277176 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || ||| |||| | | | || || || || ||| |||||| || | || Sbjct 277177 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 277236 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 107346 || | ||| | ||||| || ||| | |||| | | || | || || | | ||||| Sbjct 277237 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 277295 Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || |||| |||||||||| ||||||| || || | ||| |||||| Sbjct 277296 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 277342 >seq370 Length=202669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 306/465 (66%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726 Query 9251 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 || | |||| | |||| || | | | ||| ||||||||||| ||||| | || Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668 Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCA 9425 | || |||||||| |||||||| || ||||| || || | ||| | | || | ||| Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTCTTCGCCTTCTCA 164551 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | ||| | ||||| || |||||||||||||||| ||||||||| | | || Sbjct 164550 AACAAATCCCTCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAAGCT 164491 Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 | ||| | ||| || ||| | ||||| || | || | || | | ||||| Sbjct 164490 GCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTT 164431 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCC-CGTGGAATCTTGGCGCCACTTCCAAA 9604 || || || || ||| | |||| | ||||| ||| || || || || | || Sbjct 164430 CCGGTTCCAGGGGGCCCCACAAGGA-GACACCCTTTTGGGATTTTAGCCCCCAATGCAGT 164372 Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTC 9649 ||| | ||||| | ||| | ||| ||||||| || | |||||| Sbjct 164371 GTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327 >seq1283 Length=103335 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGAT--TTTCGCGGGCGATTTCAAAGA 9429 ||||||||||||||||| || | ||||| ||| || |||| | || | |||| | Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTTAG-CGGCTGCAAACA 48367 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9487 |||| | |||||| |||| || |||||||||||||||||| |||| | ||| | | Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || ||| || || || ||| || ||||| |||| ||| || | ||| || || Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485 Query 9548 CGTACCTGG 9556 ||||| || Sbjct 48486 AGTACCAGG 48494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589898217437520