Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1046 120 4e-22
seq63 100 3e-16
seq370 96.9 4e-15
seq1283 82.4 9e-11
>seq1046
Length=115582
Score = 120 bits (132), Expect = 4e-22
Identities = 241/355 (68%), Gaps = 2/355 (1%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | || || || || | |||| ||||| || | | |||||
Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 62636
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | ||| || || | || ||||||| ||||||||| || |
Sbjct 62635 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 62576
Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404
|||| || | |||| |||| || |||||||| ||||||| || ||||| || ||
Sbjct 62575 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 62516
Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464
|||||| || | | || |||||||| || | || |||||||||||||||
Sbjct 62515 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 62456
Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523
|| || || || | || | ||| || | || || || ||| || ||| || |||||
Sbjct 62455 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 62397
Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
|| || || |||||||| || || |||||| ||| | || ||| |||||
Sbjct 62396 AGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACCC 62342
>seq63
Length=488123
Score = 100 bits (110), Expect = 3e-16
Identities = 162/228 (71%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || |||||||| || ||||||||||| ||||| | ||||| ||||| | ||||
Sbjct 277117 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCGTGGGTGAACCACCTTTGG 277176
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| || ||| |||| | | | || || || || ||| |||||| || | ||
Sbjct 277177 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 277236
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 107346
|| | ||| | ||||| || ||| | |||| | | || | || || | | |||||
Sbjct 277237 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 277295
Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
| || |||| |||||||||| ||||||| || || | ||| ||||||
Sbjct 277296 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 277342
>seq370
Length=202669
Score = 96.9 bits (106), Expect = 4e-15
Identities = 306/465 (66%), Gaps = 12/465 (3%)
Strand=Plus/Minus
Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250
||||||||| | ||||| | || | || |||||| | |||| | ||| || ||
Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726
Query 9251 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308
|| | |||| | |||| || | | | ||| ||||||||||| ||||| | ||
Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668
Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366
|| ||||| || |||| |||||||| | | | ||| || || | | |||| | |
Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCA 9425
| || |||||||| |||||||| || ||||| || || | ||| | | || | |||
Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTCTTCGCCTTCTCA 164551
Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485
|| | ||| | ||||| || |||||||||||||||| ||||||||| | | ||
Sbjct 164550 AACAAATCCCTCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAAGCT 164491
Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545
| ||| | ||| || ||| | ||||| || | || | || | | |||||
Sbjct 164490 GCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTT 164431
Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCC-CGTGGAATCTTGGCGCCACTTCCAAA 9604
|| || || || ||| | |||| | ||||| ||| || || || || | ||
Sbjct 164430 CCGGTTCCAGGGGGCCCCACAAGGA-GACACCCTTTTGGGATTTTAGCCCCCAATGCAGT 164372
Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTC 9649
||| | ||||| | ||| | ||| ||||||| || | ||||||
Sbjct 164371 GTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327
>seq1283
Length=103335
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGAT--TTTCGCGGGCGATTTCAAAGA 9429
||||||||||||||||| || | ||||| ||| || |||| | || | |||| |
Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTTAG-CGGCTGCAAACA 48367
Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9487
|||| | |||||| |||| || |||||||||||||||||| |||| | ||| | |
Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426
Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| || ||| || || || ||| || ||||| |||| ||| || | ||| || ||
Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485
Query 9548 CGTACCTGG 9556
||||| ||
Sbjct 48486 AGTACCAGG 48494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589898217437520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |