Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq71 96.9 4e-15 seq814 87.8 2e-12 seq2208 82.4 9e-11 >seq71 Length=458239 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || || || || || || || |||||||| || || || ||| | || |||||||| Sbjct 141192 CTCGATGCAGCGGAAGAGGCTGGGGTTGACTTGCCTTACTCATGCAGGGCAGGTGCCTGC 141133 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || | |||||||||| | || | ||||| || || |||||||| || ||| |||||| Sbjct 141132 TCAACCTGTGCTGGTCAGCTCGTAAGTGGAACAGTTGATCAGTCCGATGGATCCTTCCTT 141073 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGAT 172088 || || ||||||||||| ||| | | || || |||||| |||| || | || Sbjct 141072 GACGACAATCAAATGGACAAAGGTTATTTGCTCACGTGTGTTTCTTACCCGCGATCAGAC 141013 Query 172089 TGTGTTGTCCTGGCTGAGCAGGAGGATAGTCTTTACTGAGG 172129 ||||| ||| | | |||||| |||||||||||| Sbjct 141012 TGTGTAATCCATACCCACAAGGAGGGCGATCTTTACTGAGG 140972 >seq814 Length=133700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 180441 ATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAAC 180500 ||||| ||||| ||||| || |||||| | ||||||| || ||||| ||||||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 180501 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCAC 180556 || |||| | ||||||||| | || || |||||||| || || || ||||| || Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC 56189 >seq2208 Length=69165 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 39581 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 39522 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 39521 CCTACTTGGGGAG 39509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610311359707920