Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq71 96.9 4e-15
seq814 87.8 2e-12
seq2208 82.4 9e-11
>seq71
Length=458239
Score = 96.9 bits (106), Expect = 4e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968
|| || || || || || || |||||||| || || || ||| | || ||||||||
Sbjct 141192 CTCGATGCAGCGGAAGAGGCTGGGGTTGACTTGCCTTACTCATGCAGGGCAGGTGCCTGC 141133
Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028
|| | |||||||||| | || | ||||| || || |||||||| || ||| ||||||
Sbjct 141132 TCAACCTGTGCTGGTCAGCTCGTAAGTGGAACAGTTGATCAGTCCGATGGATCCTTCCTT 141073
Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGAT 172088
|| || ||||||||||| ||| | | || || |||||| |||| || | ||
Sbjct 141072 GACGACAATCAAATGGACAAAGGTTATTTGCTCACGTGTGTTTCTTACCCGCGATCAGAC 141013
Query 172089 TGTGTTGTCCTGGCTGAGCAGGAGGATAGTCTTTACTGAGG 172129
||||| ||| | | |||||| ||||||||||||
Sbjct 141012 TGTGTAATCCATACCCACAAGGAGGGCGATCTTTACTGAGG 140972
>seq814
Length=133700
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 180441 ATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAAC 180500
||||| ||||| ||||| || |||||| | ||||||| || ||||| |||||||||
Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245
Query 180501 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCAC 180556
|| |||| | ||||||||| | || || |||||||| || || || ||||| ||
Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC 56189
>seq2208
Length=69165
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313
|||||||||||||||| || ||||| | || ||||||| | ||||||||||||| |||
Sbjct 39581 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 39522
Query 141314 CCTACCTGGGGAG 141326
||||| |||||||
Sbjct 39521 CCTACTTGGGGAG 39509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610311359707920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |