Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq51 123 2e-23
seq355 118 7e-22
seq319 107 1e-18
seq1427 100 2e-16
seq1360 96.9 2e-15
seq2834 93.3 3e-14
seq843 87.8 1e-12
>seq51
Length=574565
Score = 123 bits (136), Expect = 2e-23
Identities = 168/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||||| | |||| ||| | || ||| |||||||| || || || |
Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | | ||||||||| ||| || |||||||| || || | ||||||||| | ||
Sbjct 464105 AATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGA 464046
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930
| ||||||||||| |||||| ||| | | | | ||||||| ||| | ||
Sbjct 464045 ATTCCCTCCTTGTCCTGAATCTT-TGTCTTA---ACGTTATCGATAGTGTCAGAGCTTTC 463990
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | ||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 463989 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 463938
Score = 96.9 bits (106), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || |||||||| || || | | | |||| |||| |||| || || || |||||
Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | ||||||||| | || | ||||||||||| |||||| || || ||
Sbjct 464525 ATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCAC--AT 464468
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | ||| | |||||| |||| ||| || || || || ||||| |||||||
Sbjct 464467 TCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCA 464408
Query 34969 CAAAGATCTGCATA 34982
||||||||||||||
Sbjct 464407 CAAAGATCTGCATA 464394
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | | ||||| || | || || ||||||||||||||||| | |
Sbjct 463937 CCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 463878
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| || ||||| || || ||||| || || | |||||||| | ||
Sbjct 463877 AGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGG 463818
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| ||| || || || |||||| || || || || || | ||| | || |
Sbjct 463817 ATCCCTTCTTTATCCTGGATCTTCGTCTTCAC--ATTCTCAATGGTGTCAGAAGTTTCGA 463760
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || | ||| || || || || || || ||||| |||||||||||||||
Sbjct 463759 CTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCATA 463710
>seq355
Length=215899
Score = 118 bits (130), Expect = 7e-22
Identities = 145/196 (74%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
|||||||||||| || ||||| | || ||| |||| |||||||| ||||| |||||
Sbjct 204347 TTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCCAGCTGCTTTCCAGCAAA 204288
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || ||||||||| | || | |||||||| || ||||||| || || |
Sbjct 204287 GATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAAC--A 204230
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| ||| |||||| |||| |||||||||||||| || |||||||
Sbjct 204229 T--TGTCGATGGTGTCAAAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCT 204172
Query 34966 TCACAAAGATCTGCAT 34981
| |||||||| |||||
Sbjct 204171 TAACAAAGATTTGCAT 204156
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || | |||| | || |||| || ||||| |||||||||||
Sbjct 204574 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAG 204515
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | | ||||||||| | || | || |||||||| ||| || |||||||
Sbjct 204514 ATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTTGTTTTGACGTTA 204455
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| |||||| || | ||| || || || || ||||| ||||| |||
Sbjct 204454 TCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTTCCCGGTGAGGGTCTTAACA 204395
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 204394 AAAATCTGCAT 204384
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||| | || || | |||| | || |||| || ||||| ||||| |||||
Sbjct 205030 TCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAG 204971
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| |||| || ||||| | || | || ||||| || ||| || ||||||
Sbjct 204970 ATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTG 204911
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||||| || | ||| || || || || ||||| |||||||||
Sbjct 204910 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACA 204851
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 204850 AAGATCTGCAT 204840
>seq319
Length=213347
Score = 107 bits (118), Expect = 1e-18
Identities = 167/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||||||||| | | |||||||||| || || ||||| || || || ||||
Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
||| | | | |||| |||||||| || |||||||| || | | ||||||||| | |
Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928
| | || |||||||| ||||||| ||||| || | || || | ||| || |
Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCAATGGTGTCCGAGCTC 181051
Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| |||| ||| ||||| ||||| || | ||||| || || ||||||||
Sbjct 181050 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||| | | | || | ||||| ||| || ||||| ||||| ||||| |
Sbjct 180542 TTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 180483
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
||| |||| |||| || ||||| ||||||||||| || || | |||||||||| | |
Sbjct 180482 CGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGG 180423
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | || |||||||| ||| || |||||| | || | || | || |
Sbjct 180422 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 180363
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| |||| ||| || || ||||| || || || || ||||||||||||||
Sbjct 180362 CTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| | ||| | || |||| ||
Sbjct 180750 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCA 180691
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || | | ||||||||| | || | ||||||||||| |
Sbjct 180690 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 180631
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||| | || | || | ||| || || | ||| ||||| ||
Sbjct 180630 ATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTCTTC 180571
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||||||||||||||| |||||
Sbjct 180570 CCTGTGAGAGTCTTCACAAAGATTTGCAT 180542
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || || | |||| | || |||| || ||||| || || |||||
Sbjct 181416 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAG 181357
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | | ||||||||| | || | |||||||||||| ||||| || || ||
Sbjct 181356 ATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCAC--AT 181299
Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
|||| || | ||| || |||||| || | || ||||| || || || | |||||
Sbjct 181298 --TATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTT 181241
Query 34967 CACAAAGATCTGCAT 34981
|||||| ||||||||
Sbjct 181240 CACAAAAATCTGCAT 181226
>seq1427
Length=108667
Score = 100 bits (110), Expect = 2e-16
Identities = 156/219 (71%), Gaps = 12/219 (5%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829
||| | ||||| ||| || ||||| ||||| ||||| | |||| | || ||||
Sbjct 17810 AACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAG--TGCGGCCATCT 17753
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|| |||||||||||||| || || || ||||| |||||| | || | || || |||||
Sbjct 17752 TCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCC 17693
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945
||||| |||||| || | ||||| || || || || || | ||||||
Sbjct 17692 TGGATCTTGGCTTTGAC--AT--TGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTAT 17637
Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||||| ||||| || || ||||| ||||||||||| ||
Sbjct 17636 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 17598
>seq1360
Length=99280
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | |||| ||||| || || ||||| ||||| ||||| |
Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || | || || |||||||||||||| ||||| || || ||||||||| | ||
Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGA 35209
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || |||||||| ||||| || || | |||| || || |||||
Sbjct 35210 ATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACC 35269
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985
|| | |||||||||||| || || || || ||||| || |||||||| |||
Sbjct 35270 TCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTTC 35320
>seq2834
Length=64598
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/203 (71%), Gaps = 12/203 (6%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848
|| ||||| ||||| ||||| | |||| | || |||| || |||||||||||||| |
Sbjct 898 TCCTTCTGGATGTTGTAGTCGGCTAAAG--TGCGGCCATCTTCGAGCTGTTTTCCGGCGA 841
Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908
| || || ||||| ||||| | || | || || ||||| ||||| ||| ||
Sbjct 840 AGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCAC-- 783
Query 34909 ATGCTATCGATT----CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|| | |||||| || || || || || | |||||||||||| ||||| || ||
Sbjct 782 AT--TGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTT 725
Query 34965 TTCACAAAGATCTGCATATTCGT 34987
||||| ||||||||||| || ||
Sbjct 724 TTCACGAAGATCTGCATTTTTGT 702
>seq843
Length=130910
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/199 (71%), Gaps = 8/199 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||||||||| || || | ||| ||| | |||| |||| ||||| || |||||
Sbjct 120321 TTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAA 120262
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|||| ||||| || ||| | || | || || ||||| ||||| |||||| |
Sbjct 120261 GATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGAC--A 120204
Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| | ||| | || || || | |||||||||||| || || || || |
Sbjct 120203 T--TGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTT 120146
Query 34966 TCACAAAGATCTGCATATT 34984
|||| || |||||||| ||
Sbjct 120145 TCACGAAAATCTGCATCTT 120127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324589295426544
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