Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq51 123 2e-23 seq355 118 7e-22 seq319 107 1e-18 seq1427 100 2e-16 seq1360 96.9 2e-15 seq2834 93.3 3e-14 seq843 87.8 1e-12 >seq51 Length=574565 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||||| | |||| ||| | || ||| |||||||| || || || | Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | | ||||||||| ||| || |||||||| || || | ||||||||| | || Sbjct 464105 AATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGA 464046 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| |||||| ||| | | | | ||||||| ||| | || Sbjct 464045 ATTCCCTCCTTGTCCTGAATCTT-TGTCTTA---ACGTTATCGATAGTGTCAGAGCTTTC 463990 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 463989 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 463938 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| || || | | | |||| |||| |||| || || || ||||| Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || || Sbjct 464525 ATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCAC--AT 464468 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | |||||| |||| ||| || || || || ||||| ||||||| Sbjct 464467 TCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCA 464408 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 464407 CAAAGATCTGCATA 464394 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | ||||| || | || || ||||||||||||||||| | | Sbjct 463937 CCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 463878 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || || | |||||||| | || Sbjct 463877 AGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGG 463818 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||| || || || |||||| || || || || || | ||| | || | Sbjct 463817 ATCCCTTCTTTATCCTGGATCTTCGTCTTCAC--ATTCTCAATGGTGTCAGAAGTTTCGA 463760 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| || || || || || || ||||| ||||||||||||||| Sbjct 463759 CTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCATA 463710 >seq355 Length=215899 Score = 118 bits (130), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| | || ||| |||| |||||||| ||||| ||||| Sbjct 204347 TTCTTTCTGAATATTGTAGTCAGCGAGCGTTCTGCCATCCTCCAGCTGCTTTCCAGCAAA 204288 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | |||||||| || ||||||| || || | Sbjct 204287 GATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAAC--A 204230 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| |||||| |||| |||||||||||||| || ||||||| Sbjct 204229 T--TGTCGATGGTGTCAAAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCT 204172 Query 34966 TCACAAAGATCTGCAT 34981 | |||||||| ||||| Sbjct 204171 TAACAAAGATTTGCAT 204156 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | |||| | || |||| || ||||| ||||||||||| Sbjct 204574 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAG 204515 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | || |||||||| ||| || ||||||| Sbjct 204514 ATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTTGTTTTGACGTTA 204455 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| |||||| || | ||| || || || || ||||| ||||| ||| Sbjct 204454 TCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTTCCCGGTGAGGGTCTTAACA 204395 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 204394 AAAATCTGCAT 204384 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||| | || || | |||| | || |||| || ||||| ||||| ||||| Sbjct 205030 TCCTTCTGAATGGTGTAATCAGCAAGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAG 204971 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || ||||| | || | || ||||| || ||| || |||||| Sbjct 204970 ATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTG 204911 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || | ||| || || || || ||||| ||||||||| Sbjct 204910 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACA 204851 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 204850 AAGATCTGCAT 204840 >seq319 Length=213347 Score = 107 bits (118), Expect = 1e-18 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | | |||||||||| || || ||||| || || || |||| Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| |||||||| || |||||||| || | | ||||||||| | | Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || |||||||| ||||||| ||||| || | || || | ||| || | Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCAATGGTGTCCGAGCTC 181051 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||| ||| ||||| ||||| || | ||||| || || |||||||| Sbjct 181050 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | | || | ||||| ||| || ||||| ||||| ||||| | Sbjct 180542 TTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 180483 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| |||| |||| || ||||| ||||||||||| || || | |||||||||| | | Sbjct 180482 CGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGG 180423 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || |||||| | || | || | || | Sbjct 180422 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 180363 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| || || ||||| || || || || |||||||||||||| Sbjct 180362 CTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| | ||| | || |||| || Sbjct 180750 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCA 180691 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | | ||||||||| | || | ||||||||||| | Sbjct 180690 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 180631 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | ||| || || | ||| ||||| || Sbjct 180630 ATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTCTTC 180571 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||||||||||||||| ||||| Sbjct 180570 CCTGTGAGAGTCTTCACAAAGATTTGCAT 180542 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | |||| | || |||| || ||||| || || ||||| Sbjct 181416 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAG 181357 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| ||||| || || || Sbjct 181356 ATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCAC--AT 181299 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || | ||| || |||||| || | || ||||| || || || | ||||| Sbjct 181298 --TATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTT 181241 Query 34967 CACAAAGATCTGCAT 34981 |||||| |||||||| Sbjct 181240 CACAAAAATCTGCAT 181226 >seq1427 Length=108667 Score = 100 bits (110), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829 ||| | ||||| ||| || ||||| ||||| ||||| | |||| | || |||| Sbjct 17810 AACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAG--TGCGGCCATCT 17753 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || |||||||||||||| || || || ||||| |||||| | || | || || ||||| Sbjct 17752 TCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCC 17693 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945 ||||| |||||| || | ||||| || || || || || | |||||| Sbjct 17692 TGGATCTTGGCTTTGAC--AT--TGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTAT 17637 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||| ||||| || || ||||| ||||||||||| || Sbjct 17636 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 17598 >seq1360 Length=99280 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||| ||||| || || ||||| ||||| ||||| | Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || |||||||||||||| ||||| || || ||||||||| | || Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGA 35209 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || || | |||| || || ||||| Sbjct 35210 ATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACC 35269 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | |||||||||||| || || || || ||||| || |||||||| ||| Sbjct 35270 TCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTTC 35320 >seq2834 Length=64598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/203 (71%), Gaps = 12/203 (6%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || ||||| ||||| ||||| | |||| | || |||| || |||||||||||||| | Sbjct 898 TCCTTCTGGATGTTGTAGTCGGCTAAAG--TGCGGCCATCTTCGAGCTGTTTTCCGGCGA 841 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || ||||| ||||| | || | || || ||||| ||||| ||| || Sbjct 840 AGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCAC-- 783 Query 34909 ATGCTATCGATT----CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | |||||| || || || || || | |||||||||||| ||||| || || Sbjct 782 AT--TGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTT 725 Query 34965 TTCACAAAGATCTGCATATTCGT 34987 ||||| ||||||||||| || || Sbjct 724 TTCACGAAGATCTGCATTTTTGT 702 >seq843 Length=130910 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || | ||| ||| | |||| |||| ||||| || ||||| Sbjct 120321 TTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAA 120262 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||||| || ||| | || | || || ||||| ||||| |||||| | Sbjct 120261 GATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGAC--A 120204 Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| | || || || | |||||||||||| || || || || | Sbjct 120203 T--TGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTT 120146 Query 34966 TCACAAAGATCTGCATATT 34984 |||| || |||||||| || Sbjct 120145 TCACGAAAATCTGCATCTT 120127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324589295426544