Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq20 163 3e-35
seq63 98.7 1e-15
>seq20
Length=765589
Score = 163 bits (180), Expect = 3e-35
Identities = 411/615 (67%), Gaps = 16/615 (3%)
Strand=Plus/Minus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||||||||| || || || ||||||| ||||| || || || || ||||||
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079
|| ||||| | || | ||||| | |||||| || | |||| || |||||| |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGAT-GGAGCAGAAACTTCCAGAGAAGAA 522053
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| ||||| || |||||||||| | || || || ||| | ||| | ||
Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AAC--GATTCAGCACCATC 521996
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199
|||||| || |||||||| |||||||| || ||||| || || || || || | |
Sbjct 521995 AATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 521936
Query 19200 AAATAGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256
||| |||| | || | | | | |||||| | || | |||| | | | |||
Sbjct 521935 AAAAAGATGGGTCTTAAGGTTA---GAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTA 521879
Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316
|||||| || ||||| ||||| || || || || || || || ||| | ||||| |
Sbjct 521878 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 521819
Query 19317 TATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375
| ||| || || || || |||||| || | | ||| || ||| || || || |
Sbjct 521818 AACCTGAACCTC-CTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATG 521760
Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTAT 19432
| || || || || | | || | || ||||| | ||| || | |||||| || |
Sbjct 521759 CGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTT 521700
Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492
||| | | || ||||| || | ||| |||||||| | ||||| || ||||| || |
Sbjct 521699 CCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAG 521640
Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552
||||||| ||||| | ||| || | | |||| || || || ||| ||||||| |
Sbjct 521639 CTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTG 521580
Query 19553 TATTTTCTTTAAGAA 19567
|||||| | ||||
Sbjct 521579 GGTTTTCTGTGAGAA 521565
>seq63
Length=488123
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||| || || | ||||| ||||||| ||| | || | | ||| |||||||| |||
Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|||||| | ||||| || || |||||||||||| | || | || || | |||
Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| || ||||| || || ||| || | ||||||| || || |||||||| ||
Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
||||| || ||||||||| |||| || | || || || |||
Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562030118820720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |