Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20 163 3e-35 seq63 98.7 1e-15 >seq20 Length=765589 Score = 163 bits (180), Expect = 3e-35 Identities = 411/615 (67%), Gaps = 16/615 (3%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || || ||||||| ||||| || || || || |||||| Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||||| | || | ||||| | |||||| || | |||| || |||||| ||||| Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGAT-GGAGCAGAAACTTCCAGAGAAGAA 522053 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| || |||||||||| | || || || ||| | ||| | || Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AAC--GATTCAGCACCATC 521996 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| || |||||||| |||||||| || ||||| || || || || || | | Sbjct 521995 AATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 521936 Query 19200 AAATAGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| |||| | || | | | | |||||| | || | |||| | | | ||| Sbjct 521935 AAAAAGATGGGTCTTAAGGTTA---GAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTA 521879 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| || ||||| ||||| || || || || || || || ||| | ||||| | Sbjct 521878 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 521819 Query 19317 TATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | ||| || || || || |||||| || | | ||| || ||| || || || | Sbjct 521818 AACCTGAACCTC-CTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATG 521760 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTAT 19432 | || || || || | | || | || ||||| | ||| || | |||||| || | Sbjct 521759 CGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTT 521700 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||| | | || ||||| || | ||| |||||||| | ||||| || ||||| || | Sbjct 521699 CCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAG 521640 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||||||| ||||| | ||| || | | |||| || || || ||| ||||||| | Sbjct 521639 CTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTG 521580 Query 19553 TATTTTCTTTAAGAA 19567 |||||| | |||| Sbjct 521579 GGTTTTCTGTGAGAA 521565 >seq63 Length=488123 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||| || || | ||||| ||||||| ||| | || | | ||| |||||||| ||| Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || |||||||||||| | || | || || | ||| Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||| || || ||| || | ||||||| || || |||||||| || Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||||||| |||| || | || || || ||| Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562030118820720