Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
seq51 100 2e-16
seq319 89.7 4e-13
seq355 87.8 1e-12
>seq6
Length=1196388
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || |||| || | |||||| || || || ||| ||||| ||||||||||| |
Sbjct 28564 CCACCTCTTAAACGGAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCA 28623
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | || || | |||||| ||||| || |||| | ||| ||||| | ||||
Sbjct 28624 AGGGTCCTCCCATCCTCAAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGATCAGGGGGA 28683
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| |||||| | | | || ||||| ||| |||
Sbjct 28684 ATGCCCTCCTTGTCCTGGATCTTAGTCTTTACATTATCAATAGTGTCTGAGCTCTCAACC 28743
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| || || || || || ||||| || || |||||||||||||||
Sbjct 28744 TCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTAACAAAAATCTGCATC 28791
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| ||||||||||| |||| | | || | || || | ||||| || |||||
Sbjct 28372 TCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCTGCAAAG 28431
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGA 48694
|| |||| ||| || |||| ||||| |||||||| || || ||| ||||| |||
Sbjct 28432 ATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATC-CTGGATTTTAGTTTTCACATT 28490
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | |||| ||||| ||| ||||||| || || || || || |||||||| || ||
Sbjct 28491 ATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGAC 28550
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 28551 AAAAATCTGCATC 28563
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| |||||| || || || ||| ||||| ||||||||||| | || | | |
Sbjct 28804 CGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCA 28863
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | |||||| |||||||| |||| | || || |||| |||| ||| ||||||
Sbjct 28864 TCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTG 28923
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| |||||| ||| ||| | | | || || || ||| ||||||| || ||
Sbjct 28924 TCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATG 28983
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || |||||||| || |||||||| |||||
Sbjct 28984 GTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018
Score = 98.7 bits (108), Expect = 8e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||||||||||| ||| | || | || || | |||||| || |||||
Sbjct 29055 CTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAA 29114
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAG 48693
|||| | ||| ||||| | ||| | ||||||||||| ||| ||| || || |||
Sbjct 29115 GATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAAT-TTTGGTCTTAACAT 29173
Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753
| | || || || ||| ||||||| ||||| || || || || |||||||| |
Sbjct 29174 TGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCA 29233
Query 48754 CAAAAATCTGCAT 48766
||||||| |||||
Sbjct 29234 CAAAAATTTGCAT 29246
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||||| || | ||| | ||| || || || || || |||||||||||||
Sbjct 29248 CCTCCCCTTAATCGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATATTGTAATCAGCA 29307
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || | || || | |||||| || ||||| |||| | ||| ||||| | |||
Sbjct 29308 AGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 29367
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| ||| ||| || || ||| | | || || || ||| ||
Sbjct 29368 ATTCCCTCCTTGTCTTGAAT-TTTGGTCTTAACATTGTCAATAGTGTCGGAGCTCTCAAC 29426
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || || || |||||||| || |||||||| |||||
Sbjct 29427 CTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29474
>seq51
Length=574565
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | || || || || ||| ||| ||||| || ||||| |||| |
Sbjct 463709 CCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT 463650
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| | || |||||||||||||| || || || || | ||| || |||| ||
Sbjct 463649 AGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 463590
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||| || || | ||| || || ||| | | || || || | ||||||
Sbjct 463589 ATACCCTCCTTATC-CTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCAC 463531
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | || || || || || |||| ||||| ||||| || ||||||
Sbjct 463530 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCATC 463482
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG-- 48597
|| ||||| | ||| | ||||| || | || || || ||||||||||||||||
Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106
Query 48598 -ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656
|| |||| ||| || ||||||||| |||||||| ||||| | ||| || || |
Sbjct 464105 AATGTCCTTCCATCATC---CAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGT 464049
Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716
|||| ||||||||||| ||||||| || || | | | || || || ||
Sbjct 464048 GGAATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCA 463989
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || |||||||| || | ||| || || |||||||||||
Sbjct 463988 ACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939
>seq319
Length=213347
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| | || | |||||| || || || ||| || || ||||||||||| |
Sbjct 181224 CCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 181165
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | | | || |||| |||||| |||||||| |||| | ||| || || | |||
Sbjct 181164 AGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 181105
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| |||||||| |||||| || ||| | | | || || ||| |||
Sbjct 181104 ATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAACC 181045
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || ||||| ||||| || || || |||||||||||
Sbjct 181044 TCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| |||||||||| || | || | || || | ||||||||| |||||
Sbjct 181417 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAA 181358
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| | ||| || || | ||| | ||||||||||| ||||| || |||
Sbjct 181357 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 181298
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || || ||| ||||||| || || || || || ||||| || || ||
Sbjct 181297 ATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 181238
Query 48755 AAAAATCTGCAT 48766
||||||||||||
Sbjct 181237 AAAAATCTGCAT 181226
>seq355
Length=215899
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || ||||| ||||| || | | | | || | || |||||||||||||| |||||
Sbjct 205486 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCAGCAAAA 205427
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| | ||| || || | |||| || |||||||| ||||| || ||| |
Sbjct 205426 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTA 205367
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | || ||||| ||| ||||||| || || ||||| || ||||| ||||| |||
Sbjct 205366 TCGATAGTATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTTTTAACA 205307
Query 48756 AAAATCTGCAT 48766
|| || |||||
Sbjct 205306 AATATTTGCAT 205296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380885611302954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |