Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq51 100 2e-16 seq319 89.7 4e-13 seq355 87.8 1e-12 >seq6 Length=1196388 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | |||||| || || || ||| ||||| ||||||||||| | Sbjct 28564 CCACCTCTTAAACGGAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCA 28623 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | |||||| ||||| || |||| | ||| ||||| | |||| Sbjct 28624 AGGGTCCTCCCATCCTCAAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGATCAGGGGGA 28683 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| |||||| | | | || ||||| ||| ||| Sbjct 28684 ATGCCCTCCTTGTCCTGGATCTTAGTCTTTACATTATCAATAGTGTCTGAGCTCTCAACC 28743 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || ||||| || || ||||||||||||||| Sbjct 28744 TCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTAACAAAAATCTGCATC 28791 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| |||| | | || | || || | ||||| || ||||| Sbjct 28372 TCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCTGCAAAG 28431 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGA 48694 || |||| ||| || |||| ||||| |||||||| || || ||| ||||| ||| Sbjct 28432 ATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATC-CTGGATTTTAGTTTTCACATT 28490 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | |||| ||||| ||| ||||||| || || || || || |||||||| || || Sbjct 28491 ATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGAC 28550 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 28551 AAAAATCTGCATC 28563 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || || || ||| ||||| ||||||||||| | || | | | Sbjct 28804 CGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCA 28863 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| |||||||| |||| | || || |||| |||| ||| |||||| Sbjct 28864 TCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTG 28923 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| ||| | | | || || || ||| ||||||| || || Sbjct 28924 TCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATG 28983 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || |||||||| ||||| Sbjct 28984 GTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| ||| | || | || || | |||||| || ||||| Sbjct 29055 CTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAA 29114 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAG 48693 |||| | ||| ||||| | ||| | ||||||||||| ||| ||| || || ||| Sbjct 29115 GATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAAT-TTTGGTCTTAACAT 29173 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || || || ||| ||||||| ||||| || || || || |||||||| | Sbjct 29174 TGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCA 29233 Query 48754 CAAAAATCTGCAT 48766 ||||||| ||||| Sbjct 29234 CAAAAATTTGCAT 29246 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||| || | ||| | ||| || || || || || ||||||||||||| Sbjct 29248 CCTCCCCTTAATCGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATATTGTAATCAGCA 29307 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| || ||||| |||| | ||| ||||| | ||| Sbjct 29308 AGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 29367 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||| ||| || || ||| | | || || || ||| || Sbjct 29368 ATTCCCTCCTTGTCTTGAAT-TTTGGTCTTAACATTGTCAATAGTGTCGGAGCTCTCAAC 29426 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||||||| || |||||||| ||||| Sbjct 29427 CTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCAT 29474 >seq51 Length=574565 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || || || || ||| ||| ||||| || ||||| |||| | Sbjct 463709 CCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT 463650 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || |||||||||||||| || || || || | ||| || |||| || Sbjct 463649 AGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 463590 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||| || || | ||| || || ||| | | || || || | |||||| Sbjct 463589 ATACCCTCCTTATC-CTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCAC 463531 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || |||| ||||| ||||| || |||||| Sbjct 463530 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCATC 463482 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG-- 48597 || ||||| | ||| | ||||| || | || || || |||||||||||||||| Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106 Query 48598 -ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 || |||| ||| || ||||||||| |||||||| ||||| | ||| || || | Sbjct 464105 AATGTCCTTCCATCATC---CAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGT 464049 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| ||||||||||| ||||||| || || | | | || || || || Sbjct 464048 GGAATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCA 463989 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || |||||||| || | ||| || || ||||||||||| Sbjct 463988 ACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 >seq319 Length=213347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| || || ||||||||||| | Sbjct 181224 CCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCA 181165 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 181164 AGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 181105 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| || ||| | | | || || ||| ||| Sbjct 181104 ATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAACC 181045 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || || ||||||||||| Sbjct 181044 TCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | || | || || | ||||||||| ||||| Sbjct 181417 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAA 181358 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || || | ||| | ||||||||||| ||||| || ||| Sbjct 181357 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 181298 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || ||| ||||||| || || || || || ||||| || || || Sbjct 181297 ATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 181238 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 181237 AAAAATCTGCAT 181226 >seq355 Length=215899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || | | | | || | || |||||||||||||| ||||| Sbjct 205486 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCAGCAAAA 205427 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || || | |||| || |||||||| ||||| || ||| | Sbjct 205426 ATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTA 205367 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||| ||||||| || || ||||| || ||||| ||||| ||| Sbjct 205366 TCGATAGTATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTTTTAACA 205307 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 205306 AATATTTGCAT 205296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380885611302954