Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq20 129 1e-24 >seq20 Length=765589 Score = 129 bits (142), Expect = 1e-24 Identities = 377/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||||||||| || | ||| | |||||||| || || ||| |||| ||| Sbjct 522180 TATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAG 522121 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | ||| ||||| | ||| | || |||||||||||| || | |||| ||| Sbjct 522120 AAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCA 522061 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || || | | |||||| | || || ||| Sbjct 522060 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGA----TTC 522005 Query 48302 TTGTC--TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 | | | ||||| ||| ||||| |||||||||||||| | || || || || | Sbjct 522004 AGCACCATCA-ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTT 521946 Query 48360 CTATGGCCCGGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA 48416 | || || || || || | |||| | | | || | || || | | Sbjct 521945 CAATTGCACGAAAAAGATGGGTCTTAAGGTTA---GAATCTTTGATGTAAGTTTCTAAAA 521889 Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476 | | |||||| |||||||| | || || || ||||| ||||| || ||||| || | Sbjct 521888 GAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGC 521829 Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATC 48535 || ||| ||||| || || | |||||| ||| || |||||||| || || Sbjct 521828 GAGCTTCAGCAACCTGAACCTCCTTCATGAATCT-TCCGGCGAGATTCTCGAGAACGATG 521770 Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTG-TGGGT 48594 || ||||| || || |||||||| |||| || | | |||||| | |||| | ||| | Sbjct 521769 CCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTT 521710 Query 48595 GAGAGCATT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAG 48652 ||| || |||| | || |||| || || |||||||| |||||||||| Sbjct 521709 AAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAAT 521650 Query 48653 GACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||||||||| |||| || Sbjct 521649 GAAGCTTCAGCTTTTTTGTACATTTCCCAGAT 521618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931402408696320