Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq843 96.9 3e-15 seq51 82.4 6e-11 >seq843 Length=130910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| || |||||||| ||| ||| ||| | Sbjct 120126 AAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATC 120185 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 120186 ATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 120245 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 120246 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 120305 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || ||||| || || || |||| Sbjct 120306 CAACATTCAGAAGGAATCGACGCTTCATCTGGT 120338 >seq51 Length=574565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||| || ||||| || |||||||| || || |||||||| Sbjct 464488 GACAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAG 464547 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | ||| |||| ||||| ||||||||||| || ||||| || || Sbjct 464548 GATGGTCGAACCTTGGCTGATTACAACATTCAAAAGGAGTCTACCCTCCA 464597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425346742614042