Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 seq814 104 3e-17 seq371 102 1e-16 seq71 102 1e-16 >seq16 Length=876803 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 32623 TTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAA 32682 ||||| | ||| ||||| | |||||| | | ||||| |||||||||||||| || | Sbjct 185671 TTCTTTGTGAGTCTCAATAGTGACATCACTAATAGGATAAGCAACACAAGTGAGAACCCA 185730 Query 32683 CCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGA 32742 |||||| | || || |||||||||| || ||||| ||||||||| ||||||| Sbjct 185731 CCCTTCAGCCATCTGCCCATCATCCAAAAAGCTTTGATCTGATTGGTCTACACTACCAGA 185790 Query 32743 TACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAAC 32802 | ||| || |||| || || || || ||||| || || ||||| || || || Sbjct 185791 AGTCAACTTCCCGACACATGAGGAGCACGCGCCTGCCCGGCATGAGTAAGGCAAGTCCAC 185850 Query 32803 CCCACCTTCCT-CTGCTGCATCAAGGATGTATTGATCATC 32841 |||| | ||| |||| ||||| | |||||| | |||||| Sbjct 185851 CCCA-TTCCCTCCTGCAGCATCCAAGATGTACTCATCATC 185889 >seq814 Length=133700 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 26907 GGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTT 26966 ||| ||||| || || || || ||||| ||||| | ||||||||| || |||| ||||| Sbjct 56188 GGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACAAGAGTT 56247 Query 26967 GTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 |||||| ||||||||| |||||||| | |||||| || ||||| || || ||||| Sbjct 56248 GTTGAAACTAGCATATTGAAAGATCAATCAACCGAAATAACCATGAGCAGCTACGAT 56304 >seq371 Length=200744 Score = 102 bits (112), Expect = 1e-16 Identities = 260/389 (67%), Gaps = 19/389 (5%) Strand=Plus/Plus Query 46979 AATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAG 47038 ||||| ||| || | |||||| ||| | || | | ||||| ||||| || ||||||| Sbjct 7247 AATCAACGCAGGCAAAACATGGGAATTCTCAGGATGGAAATTGTCATTAGGGCCATATAA 7306 Query 47039 GTTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGAT---GGTATGCCTGACA 47095 || || ||||| ||| | |||| | || || ||| | || || || || Sbjct 7307 ATTAGTGGGCATACCAGAAACTGCATCCCA---ATTATGTTGAATTCGATAAGCTTGGCA 7363 Query 47096 CATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACC 47155 ||||||||| || ||||| || ||||| ||||| | ||||| | ||||| | |||||| Sbjct 7364 CATCTTGATTCCTGCAATTTTAGCAATGGCATACCACTCATTGGTGGGTTCCAAAGGACC 7423 Query 47156 ACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGA 47215 | | | || |||| | || ||||| | || || || ||||||||||| || Sbjct 7424 AGTTAAAAGTGCAGATTCCGTGATTGGTTGAGGAGCAAACTTAGGGTAAATGCAGGAGGA 7483 Query 47216 ACCAAGAAATAAAAGTTTCTTAACACCAAACTTACGTGCA----GAATGAATGATGTTTG 47271 |||||||| | ||||| | |||||| | ||| | || || |||| || | Sbjct 7484 GCCAAGAAAGAGGAGTTTTTCGACACCA----TGGGTGAAAGATGAGTGGATGACATTGG 7539 Query 47272 ATTGAATCATCAAATTATCATAG--ATGAAGTGTCCGGGATAATCCTTATTAGCACCAAT 47329 ||||||| | || | | || | ||||| | | || ||| ||||||||| || Sbjct 7540 TTTGAATC-TGAAGGT-TAATGGCAATGAAATCGGCAGGGTAAGTGTTATTAGCATGGAT 7597 Query 47330 ACCACCCACCTTTGCAGCAGCAAG-ATAA 47357 || || || || ||||||||||| |||| Sbjct 7598 TCCCCCAACTTTAGCAGCAGCAAGTATAA 7626 >seq71 Length=458239 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716 || || | |||||| ||||||| | | |||| || ||||||| || || | ||| || Sbjct 141023 GGGTAAGAAACACACGTGAGCAAATAACCTTTGTCCATTTGATTGTCGTCAAGGAAGGAT 141082 Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776 ||| || || ||||| ||| ||| | || ||| ||||| | ||| ||||||||| Sbjct 141083 CCATCGGACTGATCAACTGTTCCACTTACGAGCTGACCAGCACAGGTTGAGCAGGCACCT 141142 Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836 || | || ||||| || ||||||||| | || || |||||||| |||||||| | Sbjct 141143 GCCCTGCATGAGTAAGGCAAGTCAACCCCAGCCTCTTCCGCTGCATCGAGGATGTAAGCA 141202 Query 32837 TCATCAGCA 32845 ||||| ||| Sbjct 141203 TCATCGGCA 141211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665401247421360