Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq16 111 2e-19
seq814 104 3e-17
seq371 102 1e-16
seq71 102 1e-16
>seq16
Length=876803
Score = 111 bits (122), Expect = 2e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 32623 TTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAA 32682
||||| | ||| ||||| | |||||| | | ||||| |||||||||||||| || |
Sbjct 185671 TTCTTTGTGAGTCTCAATAGTGACATCACTAATAGGATAAGCAACACAAGTGAGAACCCA 185730
Query 32683 CCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGA 32742
|||||| | || || |||||||||| || ||||| ||||||||| |||||||
Sbjct 185731 CCCTTCAGCCATCTGCCCATCATCCAAAAAGCTTTGATCTGATTGGTCTACACTACCAGA 185790
Query 32743 TACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAAC 32802
| ||| || |||| || || || || ||||| || || ||||| || || ||
Sbjct 185791 AGTCAACTTCCCGACACATGAGGAGCACGCGCCTGCCCGGCATGAGTAAGGCAAGTCCAC 185850
Query 32803 CCCACCTTCCT-CTGCTGCATCAAGGATGTATTGATCATC 32841
|||| | ||| |||| ||||| | |||||| | ||||||
Sbjct 185851 CCCA-TTCCCTCCTGCAGCATCCAAGATGTACTCATCATC 185889
>seq814
Length=133700
Score = 104 bits (114), Expect = 3e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 26907 GGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTT 26966
||| ||||| || || || || ||||| ||||| | ||||||||| || |||| |||||
Sbjct 56188 GGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACAAGAGTT 56247
Query 26967 GTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023
|||||| ||||||||| |||||||| | |||||| || ||||| || || |||||
Sbjct 56248 GTTGAAACTAGCATATTGAAAGATCAATCAACCGAAATAACCATGAGCAGCTACGAT 56304
>seq371
Length=200744
Score = 102 bits (112), Expect = 1e-16
Identities = 260/389 (67%), Gaps = 19/389 (5%)
Strand=Plus/Plus
Query 46979 AATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAG 47038
||||| ||| || | |||||| ||| | || | | ||||| ||||| || |||||||
Sbjct 7247 AATCAACGCAGGCAAAACATGGGAATTCTCAGGATGGAAATTGTCATTAGGGCCATATAA 7306
Query 47039 GTTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGAT---GGTATGCCTGACA 47095
|| || ||||| ||| | |||| | || || ||| | || || || ||
Sbjct 7307 ATTAGTGGGCATACCAGAAACTGCATCCCA---ATTATGTTGAATTCGATAAGCTTGGCA 7363
Query 47096 CATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACC 47155
||||||||| || ||||| || ||||| ||||| | ||||| | ||||| | ||||||
Sbjct 7364 CATCTTGATTCCTGCAATTTTAGCAATGGCATACCACTCATTGGTGGGTTCCAAAGGACC 7423
Query 47156 ACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGA 47215
| | | || |||| | || ||||| | || || || ||||||||||| ||
Sbjct 7424 AGTTAAAAGTGCAGATTCCGTGATTGGTTGAGGAGCAAACTTAGGGTAAATGCAGGAGGA 7483
Query 47216 ACCAAGAAATAAAAGTTTCTTAACACCAAACTTACGTGCA----GAATGAATGATGTTTG 47271
|||||||| | ||||| | |||||| | ||| | || || |||| || |
Sbjct 7484 GCCAAGAAAGAGGAGTTTTTCGACACCA----TGGGTGAAAGATGAGTGGATGACATTGG 7539
Query 47272 ATTGAATCATCAAATTATCATAG--ATGAAGTGTCCGGGATAATCCTTATTAGCACCAAT 47329
||||||| | || | | || | ||||| | | || ||| ||||||||| ||
Sbjct 7540 TTTGAATC-TGAAGGT-TAATGGCAATGAAATCGGCAGGGTAAGTGTTATTAGCATGGAT 7597
Query 47330 ACCACCCACCTTTGCAGCAGCAAG-ATAA 47357
|| || || || ||||||||||| ||||
Sbjct 7598 TCCCCCAACTTTAGCAGCAGCAAGTATAA 7626
>seq71
Length=458239
Score = 102 bits (112), Expect = 1e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716
|| || | |||||| ||||||| | | |||| || ||||||| || || | ||| ||
Sbjct 141023 GGGTAAGAAACACACGTGAGCAAATAACCTTTGTCCATTTGATTGTCGTCAAGGAAGGAT 141082
Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776
||| || || ||||| ||| ||| | || ||| ||||| | ||| |||||||||
Sbjct 141083 CCATCGGACTGATCAACTGTTCCACTTACGAGCTGACCAGCACAGGTTGAGCAGGCACCT 141142
Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836
|| | || ||||| || ||||||||| | || || |||||||| |||||||| |
Sbjct 141143 GCCCTGCATGAGTAAGGCAAGTCAACCCCAGCCTCTTCCGCTGCATCGAGGATGTAAGCA 141202
Query 32837 TCATCAGCA 32845
||||| |||
Sbjct 141203 TCATCGGCA 141211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665401247421360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |