Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1046 114 2e-20
seq63 104 3e-17
seq370 87.8 2e-12
>seq1046
Length=115582
Score = 114 bits (126), Expect = 2e-20
Identities = 280/421 (67%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | ||||| || || || |||| || || | | || ||| ||| |||||
Sbjct 62280 GAGGTAGTGGAATTCCTGAAAAAACCTGAAAGGTTTACTGCTGTTGGAGCCCGCATCCCT 62339
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
|| | ||| || | ||| |||||| || |||||||| || || || || ||
Sbjct 62340 AAGGGTGTCCTGCTTGTTGGTCCGCCAGGGACAGGAAAGACTCTACTGGCTAAGGCTATT 62399
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| || ||| | ||| || || || || | |||| || | || || || ||||
Sbjct 62400 GCTGGAGAAGCTGGTGTTCCTTTTTTCTCCATT--TCTGGGTCAGAGTTCGTTGAAATGT 62457
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
||||||||||||| || | || |||||||| || | | || |||||| |
Sbjct 62458 TTGTTGGTGTGGGAGCATCTCGAGTGCGCGATCTTTTCAAGAAGGCAAAAGAAAATGCTC 62517
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528
| || ||||| || ||||||| |||||||| || || | |||| || | | ||| |
Sbjct 62518 CTTGCATTGTGTTTGTTGATGAAATTGATGCAGTAGGAAGGCAA---AGAGGTACTGGAA 62574
Query 175529 T---GCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585
| | || |||||| || || ||||| ||| | ||||| || || || ||||||||||
Sbjct 62575 TCGGGGGAGGAAATGATGAAAGGGAACAGACATTGAATCAGCTTCTAACTGAGATGGATG 62634
Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645
||||||| | | ||||| || | ||| |||| || ||||| | | || || ||||
Sbjct 62635 GCTTTGAGGGTAACACTGGTATCATTGTTGTTGCTGCAACTAACAGGGCAGACATTCTTG 62694
Query 175646 A 175646
|
Sbjct 62695 A 62695
>seq63
Length=488123
Score = 104 bits (114), Expect = 3e-17
Identities = 163/228 (71%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-ACG 75186
|||||| ||| | || || ||||||| |||||||||| |||| || | ||||| | | |
Sbjct 277342 GGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAAG 277284
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | |||| | || ||| ||||| | ||| |||| || | || ||
Sbjct 277283 GTTCAAGGG-ACGGTTGTGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGAT 277225
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|||| ||| || || || || | | | |||| ||| || |||||||||| | |||
Sbjct 277224 CCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGTT 277165
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||||| | ||||| ||||||||||| || |||||||| || ||
Sbjct 277164 CACCCACGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCA 277117
>seq370
Length=202669
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC- 175454
||||||||| |||||||||||||||| || ||||| | ||| | ||||| | ||
Sbjct 164501 TTTGTGGAGCTGTTTGTTGGTGTGGGAGCTTCCAGGGTGAGGGATTTGTTTGAGAAGGCG 164560
Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514
| | ||| | || || ||||| || |||||||| |||||||| || || | |||| |
Sbjct 164561 AAGAGTAAAGC-GCCTTGCATTGTGTTTATTGATGAAATTGATGCTGTTGGGAGGCAAAG 164619
Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572
| || || ||| | | | |||||| ||||| || || || || ||||| | |
Sbjct 164620 AGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGGGAGCAGACTATCAATCAGTTGTTG 164677
Query 175573 ACCGAGATGGATGGCTTT 175590
|| ||||||||||| |||
Sbjct 164678 ACTGAGATGGATGGGTTT 164695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596486095170240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |