Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1046 114 2e-20 seq63 104 3e-17 seq370 87.8 2e-12 >seq1046 Length=115582 Score = 114 bits (126), Expect = 2e-20 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| || || || |||| || || | | || ||| ||| ||||| Sbjct 62280 GAGGTAGTGGAATTCCTGAAAAAACCTGAAAGGTTTACTGCTGTTGGAGCCCGCATCCCT 62339 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | ||| || | ||| |||||| || |||||||| || || || || || Sbjct 62340 AAGGGTGTCCTGCTTGTTGGTCCGCCAGGGACAGGAAAGACTCTACTGGCTAAGGCTATT 62399 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| | ||| || || || || | |||| || | || || || |||| Sbjct 62400 GCTGGAGAAGCTGGTGTTCCTTTTTTCTCCATT--TCTGGGTCAGAGTTCGTTGAAATGT 62457 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 ||||||||||||| || | || |||||||| || | | || |||||| | Sbjct 62458 TTGTTGGTGTGGGAGCATCTCGAGTGCGCGATCTTTTCAAGAAGGCAAAAGAAAATGCTC 62517 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | || ||||| || ||||||| |||||||| || || | |||| || | | ||| | Sbjct 62518 CTTGCATTGTGTTTGTTGATGAAATTGATGCAGTAGGAAGGCAA---AGAGGTACTGGAA 62574 Query 175529 T---GCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | || |||||| || || ||||| ||| | ||||| || || || |||||||||| Sbjct 62575 TCGGGGGAGGAAATGATGAAAGGGAACAGACATTGAATCAGCTTCTAACTGAGATGGATG 62634 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 ||||||| | | ||||| || | ||| |||| || ||||| | | || || |||| Sbjct 62635 GCTTTGAGGGTAACACTGGTATCATTGTTGTTGCTGCAACTAACAGGGCAGACATTCTTG 62694 Query 175646 A 175646 | Sbjct 62695 A 62695 >seq63 Length=488123 Score = 104 bits (114), Expect = 3e-17 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-ACG 75186 |||||| ||| | || || ||||||| |||||||||| |||| || | ||||| | | | Sbjct 277342 GGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAAG 277284 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||| | || ||| ||||| | ||| |||| || | || || Sbjct 277283 GTTCAAGGG-ACGGTTGTGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGAT 277225 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || || || || | | | |||| ||| || |||||||||| | ||| Sbjct 277224 CCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGTT 277165 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||||| | ||||| ||||||||||| || |||||||| || || Sbjct 277164 CACCCACGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCA 277117 >seq370 Length=202669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC- 175454 ||||||||| |||||||||||||||| || ||||| | ||| | ||||| | || Sbjct 164501 TTTGTGGAGCTGTTTGTTGGTGTGGGAGCTTCCAGGGTGAGGGATTTGTTTGAGAAGGCG 164560 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | ||| | || || ||||| || |||||||| |||||||| || || | |||| | Sbjct 164561 AAGAGTAAAGC-GCCTTGCATTGTGTTTATTGATGAAATTGATGCTGTTGGGAGGCAAAG 164619 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || ||| | | | |||||| ||||| || || || || ||||| | | Sbjct 164620 AGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGGGAGCAGACTATCAATCAGTTGTTG 164677 Query 175573 ACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 164678 ACTGAGATGGATGGGTTT 164695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596486095170240