Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 4e-23
seq2834 114 2e-20
seq1427 114 2e-20
seq355 111 3e-19
seq51 109 1e-18
seq1360 102 1e-16
seq338 96.9 6e-15
seq319 91.5 3e-13
>seq6
Length=1196388
Score = 123 bits (136), Expect = 4e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| | | ||||| |||| || | |||| ||| || || |||
Sbjct 29923 ATTTGCATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTA 29982
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | |||| ||| || | ||||| || ||||| || | | ||| |||
Sbjct 29983 TAGTCTGCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGA 30042
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || ||||||||||||||||| |||||||| || | ||| ||| ||||| |||
Sbjct 30043 TCTGGGGGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAA 30102
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || |||||||| | || || ||||| ||||| ||||| ||||||||
Sbjct 30103 CTCTCGACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
Score = 96.9 bits (106), Expect = 6e-15
Identities = 164/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| || ||||| || || ||||| | || | ||| || || ||
Sbjct 29694 AATTTGCATACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTT 29753
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|| || | | || | ||| || | || || || ||||| || || ||||| ||
Sbjct 29754 GTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTG 29813
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || ||||||||||| || || || ||||| || | ||| | ||| || ||
Sbjct 29814 ATCCGGGGGGATTCCTTCTTTGTCCTGAATCTTGGTCTTAACATTGTCGACAGTGTCAGA 29873
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| || | || || ||||| ||||| | || |||||||| |||||||||
Sbjct 29874 GCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCATT 29931
>seq2834
Length=64598
Score = 114 bits (126), Expect = 2e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | ||||| || || || | || | ||| || || || |||||||
Sbjct 935 ACCACCACGAAGGCGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 876
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
||| || | ||| || | ||||||||||| || || | | ||||| || || ||
Sbjct 875 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGG 816
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| |||||||| ||||| || |||| ||| | ||| || || || || || || ||
Sbjct 815 GATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGAC 756
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|||||| ||||| |||||||| ||||| ||||| || || || ||||||||
Sbjct 755 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 705
>seq1427
Length=108667
Score = 114 bits (126), Expect = 2e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | ||||| || || || | || | ||| || || || |||||||
Sbjct 17828 ACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 17769
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
||| || | ||| || | ||||||||||| || || | | ||||| || || ||
Sbjct 17768 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 17709
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| |||||||| || || || |||| ||| | ||| || |||||||| || || ||
Sbjct 17708 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGAC 17649
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| |||||||| ||||| ||||| || || || ||||||||
Sbjct 17648 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 17598
>seq355
Length=215899
Score = 111 bits (122), Expect = 3e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || |||||||| || || ||||| ||||| | || | ||| || ||| |
Sbjct 205075 ATTTGCATTCCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTG 205016
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | | || | ||| || | || ||||| ||||| || | |||||||||
Sbjct 205015 TAATCAGCAAGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGG 204956
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
||||| || || ||||| |||||||| ||||||||||| | ||| ||| || |||||
Sbjct 204955 TCAGGGGGAATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAG 204896
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || || || || || ||||| || |||||
Sbjct 204895 CTTTCAACCTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|||||||||||||| || || ||||| || || || || || ||||| || ||||| |||
Sbjct 204757 TGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATT 204698
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||||||| | ||| |||||| || || ||||| || || || ||||| || ||
Sbjct 204697 TTGGTTTTAACATTATCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCA 204638
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || |||||||| || |||||
Sbjct 204637 GTGAGGGTCTTTACAAAGATCTGCAT 204612
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || || ||||| || || || || || ||||| || ||||| |||
Sbjct 204529 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 204470
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| ||||| | || |||||| || ||| ||||||||| || || ||||| || ||
Sbjct 204469 TTTGTTTTGACGTTATCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTTCCCG 204410
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||| || |||||
Sbjct 204409 GTGAGGGTCTTAACAAAAATCTGCAT 204384
Score = 98.7 bits (108), Expect = 2e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || || || || || |||||||| || ||||| || || || || |||||||| ||
Sbjct 205451 ATCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTT 205392
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| ||||| || || || | ||| |||||||| || |||||| || | || ||
Sbjct 205391 GTCCTGTATCTTAGTCTTGACATTATCGATAGTATCTGAGCTCTCAACCTCCAAGGTGAT 205332
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| || || | ||||| |||||||||||||||
Sbjct 205331 GGTTTTCCCAGTCAAGGTTTTAACAAATATTTGCATT 205295
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || || ||||| || ||||| |||| || | ||||| ||| || |||||
Sbjct 205303 ATTTGCATTCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTG 205244
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || || ||| || | || || || ||||| ||||| || || |||
Sbjct 205243 TAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGA 205184
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || |||||||| || || | || | ||| ||| || || |||
Sbjct 205183 TCTGGGGGAATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAA 205124
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||| || || | ||| || || || || || | || || || ||||||||||||
Sbjct 205123 CTCTCGACCTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCATT 205067
>seq51
Length=574565
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| || ||||| || || |||| ||||| |||| ||| || ||| ||||||||
Sbjct 463940 ATACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCT 463881
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || | || || || |||||||| | ||||| || || ||
Sbjct 463880 GCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGT 463821
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||||||||| || || || || || | ||| ||| || || |||| ||
Sbjct 463820 GGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCG 463761
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | || || || || |||||||| || || ||||| || |||||
Sbjct 463760 ACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||||||||| | || || |||| |||| || | || || || || || ||
Sbjct 464396 ATACCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 464337
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || || ||| || | || || || ||||| || | ||||| || |||||
Sbjct 464336 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 464277
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || || || | ||| ||| ||||| || |||
Sbjct 464276 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCA 464217
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || ||||| || || || || || || || || |||||
Sbjct 464216 ACTTCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167
>seq1360
Length=99280
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| |||| ||||| ||||| || | || | ||| || || || |||||||
Sbjct 35089 ACCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 35148
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | || || | ||||||||||| || || | | ||| || || || ||
Sbjct 35149 GAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGG 35208
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || ||||| || || || || | ||| || || || || || |||||
Sbjct 35209 AATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAAC 35268
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||
Sbjct 35269 CTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTT 35319
>seq338
Length=211836
Score = 96.9 bits (106), Expect = 6e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| |||||||| || || | | ||||||||| || | || ||||||||
Sbjct 171334 TCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTG 171393
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||| | || | ||| || || || ||| ||||| || || || ||
Sbjct 171394 TCATGAATTTTAGCCTTGACATTGTTGATGGTGTCACTAGATTCAACCTCAAGGGTGATG 171453
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|||||||| || || ||||| |||||||||||||||||
Sbjct 171454 GTTTTACCCGTAAGAGTTTTCACAAATATTTGCATTTT 171491
>seq319
Length=213347
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|| || ||||||| | |||| ||| || | || ||||||||||| || | ||
Sbjct 180495 ATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTT 180436
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| || || || || |||||||| || ||||| ||||||| || | || ||| ||
Sbjct 180435 TGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTG 180376
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||||| || ||||| || || || || || |||||||| ||||| ||||| || |||
Sbjct 180375 TCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGC 180316
Query 193359 ATT 193361
|||
Sbjct 180315 ATT 180313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899528470875360
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