Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6 123 4e-23 seq2834 114 2e-20 seq1427 114 2e-20 seq355 111 3e-19 seq51 109 1e-18 seq1360 102 1e-16 seq338 96.9 6e-15 seq319 91.5 3e-13 >seq6 Length=1196388 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | ||||| |||| || | |||| ||| || || ||| Sbjct 29923 ATTTGCATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTA 29982 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | |||| ||| || | ||||| || ||||| || | | ||| ||| Sbjct 29983 TAGTCTGCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGA 30042 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| |||||||| || | ||| ||| ||||| ||| Sbjct 30043 TCTGGGGGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAA 30102 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||||||| | || || ||||| ||||| ||||| |||||||| Sbjct 30103 CTCTCGACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Score = 96.9 bits (106), Expect = 6e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| || ||||| || || ||||| | || | ||| || || || Sbjct 29694 AATTTGCATACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTT 29753 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | || | ||| || | || || || ||||| || || ||||| || Sbjct 29754 GTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTG 29813 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| || || || ||||| || | ||| | ||| || || Sbjct 29814 ATCCGGGGGGATTCCTTCTTTGTCCTGAATCTTGGTCTTAACATTGTCGACAGTGTCAGA 29873 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || | || || ||||| ||||| | || |||||||| ||||||||| Sbjct 29874 GCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCATT 29931 >seq2834 Length=64598 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || || || | || | ||| || || || ||||||| Sbjct 935 ACCACCACGAAGGCGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 876 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| || | ||||||||||| || || | | ||||| || || || Sbjct 875 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGG 816 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| ||||| || |||| ||| | ||| || || || || || || || Sbjct 815 GATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGAC 756 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| ||||| |||||||| ||||| ||||| || || || |||||||| Sbjct 755 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 705 >seq1427 Length=108667 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || || || | || | ||| || || || ||||||| Sbjct 17828 ACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 17769 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| || | ||||||||||| || || | | ||||| || || || Sbjct 17768 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 17709 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| || || || |||| ||| | ||| || |||||||| || || || Sbjct 17708 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGAC 17649 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| |||||||| ||||| ||||| || || || |||||||| Sbjct 17648 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 17598 >seq355 Length=215899 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| || || ||||| ||||| | || | ||| || ||| | Sbjct 205075 ATTTGCATTCCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTG 205016 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | || | ||| || | || ||||| ||||| || | ||||||||| Sbjct 205015 TAATCAGCAAGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGG 204956 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| |||||||| ||||||||||| | ||| ||| || ||||| Sbjct 204955 TCAGGGGGAATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAG 204896 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || ||||| || ||||| Sbjct 204895 CTTTCAACCTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || || ||||| || || || || || ||||| || ||||| ||| Sbjct 204757 TGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATT 204698 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||||||| | ||| |||||| || || ||||| || || || ||||| || || Sbjct 204697 TTGGTTTTAACATTATCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCA 204638 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||| || ||||| Sbjct 204637 GTGAGGGTCTTTACAAAGATCTGCAT 204612 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || || ||||| || ||||| ||| Sbjct 204529 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 204470 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||||| | || |||||| || ||| ||||||||| || || ||||| || || Sbjct 204469 TTTGTTTTGACGTTATCAATAGTGTCAGAACTCTCAACTTCAAGGGTGATAGTCTTCCCG 204410 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 204409 GTGAGGGTCTTAACAAAAATCTGCAT 204384 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || || || |||||||| || ||||| || || || || |||||||| || Sbjct 205451 ATCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTT 205392 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || ||||| || || || | ||| |||||||| || |||||| || | || || Sbjct 205391 GTCCTGTATCTTAGTCTTGACATTATCGATAGTATCTGAGCTCTCAACCTCCAAGGTGAT 205332 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | ||||| ||||||||||||||| Sbjct 205331 GGTTTTCCCAGTCAAGGTTTTAACAAATATTTGCATT 205295 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| || ||||| |||| || | ||||| ||| || ||||| Sbjct 205303 ATTTGCATTCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTG 205244 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | || || || ||||| ||||| || || ||| Sbjct 205243 TAGTCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGA 205184 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || |||||||| || || | || | ||| ||| || || ||| Sbjct 205183 TCTGGGGGAATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAA 205124 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || | ||| || || || || || | || || || |||||||||||| Sbjct 205123 CTCTCGACCTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCATT 205067 >seq51 Length=574565 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || ||||| || || |||| ||||| |||| ||| || ||| |||||||| Sbjct 463940 ATACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCT 463881 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || |||||||| | ||||| || || || Sbjct 463880 GCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGT 463821 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || || || | ||| ||| || || |||| || Sbjct 463820 GGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCG 463761 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || |||||||| || || ||||| || ||||| Sbjct 463760 ACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || |||| |||| || | || || || || || || Sbjct 464396 ATACCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 464337 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || || || ||||| || | ||||| || ||||| Sbjct 464336 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 464277 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || || || | ||| ||| ||||| || ||| Sbjct 464276 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCA 464217 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || || || || || || ||||| Sbjct 464216 ACTTCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167 >seq1360 Length=99280 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| |||| ||||| ||||| || | || | ||| || || || ||||||| Sbjct 35089 ACCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 35148 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | || || | ||||||||||| || || | | ||| || || || || Sbjct 35149 GAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGG 35208 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || || || || | ||| || || || || || ||||| Sbjct 35209 AATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAAC 35268 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| ||||| || ||||| ||||| || ||||| ||||| || Sbjct 35269 CTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTT 35319 >seq338 Length=211836 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||| || || | | ||||||||| || | || |||||||| Sbjct 171334 TCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTG 171393 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| || || || ||| ||||| || || || || Sbjct 171394 TCATGAATTTTAGCCTTGACATTGTTGATGGTGTCACTAGATTCAACCTCAAGGGTGATG 171453 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || || ||||| ||||||||||||||||| Sbjct 171454 GTTTTACCCGTAAGAGTTTTCACAAATATTTGCATTTT 171491 >seq319 Length=213347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| | |||| ||| || | || ||||||||||| || | || Sbjct 180495 ATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTT 180436 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || |||||||| || ||||| ||||||| || | || ||| || Sbjct 180435 TGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTG 180376 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || ||||| || || || || || |||||||| ||||| ||||| || ||| Sbjct 180375 TCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGC 180316 Query 193359 ATT 193361 ||| Sbjct 180315 ATT 180313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899528470875360