Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq20 123 4e-23 seq355 109 8e-19 seq6 100 4e-16 seq2834 96.9 5e-15 seq843 96.9 5e-15 seq51 89.7 8e-13 seq1427 87.8 3e-12 seq319 86.0 9e-12 >seq20 Length=765589 Score = 123 bits (136), Expect = 4e-23 Identities = 360/552 (65%), Gaps = 10/552 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||| | ||||| |||| ||||| | ||||| || ||||| Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | ||||| ||||| || || || |||||| | ||| ||||| Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 522052 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC--TCA 18335 || || ||||| || || || || || || || |||||||| ||| | | ||| Sbjct 522051 ATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACG---ATTCAGCACCATCA 521995 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| | ||||| ||| | | | ||| || ||| | || || ||| Sbjct 521994 --ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 521937 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 ||| | || || || |||||||| || ||||| || | | | ||| |||| Sbjct 521936 GAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 521877 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 ||||||| || ||| |||| || || || || || | ||| || | | ||| || | | Sbjct 521876 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 521817 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 |||| ||| | |||||| | | | |||||| ||| || ||||| | | | Sbjct 521816 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 521757 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCAT-TATCCTTGAGATTGTT--CC 18632 |||| || || | | | | |||||||| | ||| | | || |||| ||| || Sbjct 521756 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 521697 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | | | ||||| || ||||| |||||||| | ||||| || || | ||| || | Sbjct 521696 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 521637 Query 18693 GTTTGTACATTT 18704 ||||||||||| Sbjct 521636 TTTTGTACATTT 521625 >seq355 Length=215899 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||| ||||| || || || || || || || Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || | ||| ||||| || || ||||| || || ||||| || Sbjct 205355 AGATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACCA 205414 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| ||||||||| | || ||| | ||||| |||| || || Sbjct 205415 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACAA 205474 Query 156002 TAT 156004 || Sbjct 205475 CAT 205477 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | || || |||||||| || || || || || || ||||| ||| Sbjct 205067 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 205126 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || |||||||| || ||||| || ||||| || Sbjct 205127 AGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCA 205186 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| || || | ||| || ||||||||||| ||| || || | | || || | Sbjct 205187 GCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACA- 205245 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| ||| | || ||||| || ||| | | |||||||| || Sbjct 205246 -ATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 205294 >seq6 Length=1196388 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| || | || || | || ||||| |||| Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| | ||||| |||||||||||||| || || ||||| || Sbjct 30098 GATACGATTGATAATGTGAAGACCAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 30039 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||| ||||| |||||||| ||| | |||| | |||| ||||| Sbjct 30038 CAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAAC 29979 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || || || ||| Sbjct 29978 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 29949 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || || || || |||||||| || || || || || Sbjct 29246 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 29187 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | ||||| ||||| || || || || || ||||| || Sbjct 29186 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 29127 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| ||| Sbjct 29126 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 29067 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || || ||| | || | |||||||||| || Sbjct 29066 ATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGG 29020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| |||||||| ||||| || || || ||| || Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | | | || || || | || || || || |||||||| || || || || || Sbjct 29871 TGACACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGATCA 29812 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| || Sbjct 29811 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACAA 29752 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || || ||| | ||| | ||||||| || ||| Sbjct 29751 CATCCAGAAGGAGTCAACCCTCCATCTTGTGCTCCGATTAAGGGGTGGT 29703 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || || || || || || || || || || Sbjct 29474 ATGCAAATTTTTGTGAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 29415 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | ||||| ||||| || || || || || ||||| || Sbjct 29414 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 29355 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| ||| Sbjct 29354 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 29295 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || ||| | ||| | ||||||| || ||| Sbjct 29294 ATCCAGAAGGAATCAACCCTCCATCTTGTGCTCCGATTAAGGGGAGGT 29247 >seq2834 Length=64598 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || ||||| || || ||||||||||| Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || || |||||| || || ||||| ||||||||||| || || || Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||||| || |||||||||||| | | |||||| | || || Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 884 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 || || || ||| | || ||||| Sbjct 885 AACATCCAGAAGGAGTCAACCCTTCA 910 >seq843 Length=130910 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | ||||| ||||| || || ||||||||||| Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || || || |||| || || ||||| ||||||||||| || ||||| Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | ||| || || || | |||||| ||||| | ||||||| Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 120306 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || || ||||||||||| | ||| Sbjct 120307 AACATTCAGAAGGAATCGACGCTTCATCTGGTG 120339 >seq51 Length=574565 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || || || || || ||||||||| |||| Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| | || || || ||||||||||| || || || || || Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| || ||| | | ||| | |||| ||||| Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || ||||| || Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGT 463919 >seq1427 Length=108667 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || ||||| || || |||| |||||| Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || || || ||| || || || || ||||||||||| || ||||| Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||||| || |||||||||||| | | |||||| | || || Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 17777 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 || || || ||| | || ||||| Sbjct 17778 AACATCCAGAAGGAGTCCACCCTTCA 17803 >seq319 Length=213347 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| | || ||||| || || || | ||||||||| || Sbjct 180313 AATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTC 180372 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 180373 CGACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACCA 180432 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986 ||||| | || | |||||| ||||||||||| ||| | |||| Sbjct 180433 GCAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAAC 180477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731769556216800