Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq20 123 4e-23
seq355 109 8e-19
seq6 100 4e-16
seq2834 96.9 5e-15
seq843 96.9 5e-15
seq51 89.7 8e-13
seq1427 87.8 3e-12
seq319 86.0 9e-12
>seq20
Length=765589
Score = 123 bits (136), Expect = 4e-23
Identities = 360/552 (65%), Gaps = 10/552 (2%)
Strand=Plus/Minus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
|| ||||||||| ||| | ||||| |||| ||||| | ||||| || |||||
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
|| ||||||| || | ||||| ||||| || || || |||||| | ||| |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 522052
Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC--TCA 18335
|| || ||||| || || || || || || || |||||||| ||| | | |||
Sbjct 522051 ATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACG---ATTCAGCACCATCA 521995
Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395
||||| | ||||| ||| | | | ||| || ||| | || || |||
Sbjct 521994 --ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 521937
Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455
||| | || || || |||||||| || ||||| || | | | ||| ||||
Sbjct 521936 GAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 521877
Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515
||||||| || ||| |||| || || || || || | ||| || | | ||| || | |
Sbjct 521876 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 521817
Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575
|||| ||| | |||||| | | | |||||| ||| || ||||| | | |
Sbjct 521816 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 521757
Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCAT-TATCCTTGAGATTGTT--CC 18632
|||| || || | | | | |||||||| | ||| | | || |||| ||| ||
Sbjct 521756 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 521697
Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
| | | | ||||| || ||||| |||||||| | ||||| || || | ||| || |
Sbjct 521696 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 521637
Query 18693 GTTTGTACATTT 18704
|||||||||||
Sbjct 521636 TTTTGTACATTT 521625
>seq355
Length=215899
Score = 109 bits (120), Expect = 8e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||||||| ||||||| |||||||| ||||| || || || || || || ||
Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| ||| || || || | ||| ||||| || || ||||| || || ||||| ||
Sbjct 205355 AGATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACCA 205414
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || ||||||| ||| ||||||||| | || ||| | ||||| |||| || ||
Sbjct 205415 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACAA 205474
Query 156002 TAT 156004
||
Sbjct 205475 CAT 205477
Score = 104 bits (114), Expect = 3e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||||||||| | || || |||||||| || || || || || || ||||| |||
Sbjct 205067 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 205126
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || || || || || |||||||| || ||||| || ||||| ||
Sbjct 205127 AGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCA 205186
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||| || || | ||| || ||||||||||| ||| || || | | || || |
Sbjct 205187 GCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACA- 205245
Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
||||||||| ||| | || ||||| || ||| | | |||||||| ||
Sbjct 205246 -ATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 205294
>seq6
Length=1196388
Score = 100 bits (110), Expect = 4e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | ||||| || | || || | || ||||| ||||
Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| | ||||| |||||||||||||| || || ||||| ||
Sbjct 30098 GATACGATTGATAATGTGAAGACCAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 30039
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | |||| | ||| ||||| |||||||| ||| | |||| | |||| |||||
Sbjct 30038 CAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAAC 29979
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || ||| | || || || || |||
Sbjct 29978 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 29949
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| || || || || |||||||| || || || || ||
Sbjct 29246 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 29187
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || | ||||| ||||| || || || || || ||||| ||
Sbjct 29186 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 29127
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| |||
Sbjct 29126 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 29067
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || ||| | || || ||| | || | |||||||||| ||
Sbjct 29066 ATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGG 29020
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || ||||| |||||||| ||||| || || || ||| ||
Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | | | || || || | || || || || |||||||| || || || || ||
Sbjct 29871 TGACACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGATCA 29812
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| ||
Sbjct 29811 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACAA 29752
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || || ||| | ||| | ||||||| || |||
Sbjct 29751 CATCCAGAAGGAGTCAACCCTCCATCTTGTGCTCCGATTAAGGGGTGGT 29703
Score = 87.8 bits (96), Expect = 3e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || ||||| || || || || || || || || || ||
Sbjct 29474 ATGCAAATTTTTGTGAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 29415
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || | ||||| ||||| || || || || || ||||| ||
Sbjct 29414 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 29355
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||| || ||||||||||| ||| | ||| | | ||||| |||
Sbjct 29354 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 29295
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || || | || || ||| | ||| | ||||||| || |||
Sbjct 29294 ATCCAGAAGGAATCAACCCTCCATCTTGTGCTCCGATTAAGGGGAGGT 29247
>seq2834
Length=64598
Score = 96.9 bits (106), Expect = 5e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || || | ||||| | || || ||||| || || |||||||||||
Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||| | || || |||||| || || ||||| ||||||||||| || || ||
Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | | || | ||||| || |||||||||||| | | |||||| | || ||
Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 884
Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025
|| || || ||| | || |||||
Sbjct 885 AACATCCAGAAGGAGTCAACCCTTCA 910
>seq843
Length=130910
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || || | ||||| | ||||| ||||| || || |||||||||||
Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | || || || |||| || || ||||| ||||||||||| || |||||
Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | || || | ||| || || || | |||||| ||||| | |||||||
Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 120306
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || || || ||||||||||| | |||
Sbjct 120307 AACATTCAGAAGGAATCGACGCTTCATCTGGTG 120339
>seq51
Length=574565
Score = 89.7 bits (98), Expect = 8e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | || || || || || || || ||||||||| ||||
Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| | || || || ||||||||||| || || || || ||
Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | |||| ||| || |||||||| || ||| | | ||| | |||| |||||
Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| | || || ||||| ||
Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGT 463919
>seq1427
Length=108667
Score = 87.8 bits (96), Expect = 3e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || || | ||||| | || || ||||| || || |||| ||||||
Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| |||| || || || ||| || || || || ||||||||||| || |||||
Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | | || | ||||| || |||||||||||| | | |||||| | || ||
Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 17777
Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025
|| || || ||| | || |||||
Sbjct 17778 AACATCCAGAAGGAGTCCACCCTTCA 17803
>seq319
Length=213347
Score = 86.0 bits (94), Expect = 9e-12
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | ||||| | || ||||| || || || | ||||||||| ||
Sbjct 180313 AATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTC 180372
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||||| || ||||| ||||| || ||||| || || ||||| ||
Sbjct 180373 CGACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACCA 180432
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986
||||| | || | |||||| ||||||||||| ||| | ||||
Sbjct 180433 GCAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAAC 180477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731769556216800
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