Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq843 141 2e-28
seq355 134 2e-26
seq51 113 8e-20
seq2834 109 1e-18
seq1427 104 4e-17
seq6 104 4e-17
seq1360 100 5e-16
seq20 93.3 8e-14
seq338 86.0 1e-11
>seq843
Length=130910
Score = 141 bits (156), Expect = 2e-28
Identities = 174/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
|||| |||| || | |||||| | || | ||| | || | || || ||| || |
Sbjct 120364 TCATGGTACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGT 120305
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||||| | | || | | || ||||||||||| |||||||| ||||| | ||||| |
Sbjct 120304 AATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGAT 120245
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014
| ||||| || |||||||| ||||| || || |||| ||||| || || || || |
Sbjct 120244 CTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATG 120185
Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|||| |||||||| || |||||||| ||||||| ||||| | ||| |||||||| ||
Sbjct 120184 ATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTT 120127
>seq355
Length=215899
Score = 134 bits (148), Expect = 2e-26
Identities = 140/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| || || |||| |||| || | || ||||| || |||||||||||||| || ||
Sbjct 205478 AATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCAGCAAAAATCAACCT 205419
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| ||||| |||||||| || || ||||| ||| | || |||||| |||||
Sbjct 205418 CTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGT 205359
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|||||| || || || | || |||||||| ||||| || ||||||| ||||| ||
Sbjct 205358 ATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTTTTAACAAATATTTG 205299
Query 172067 CATT 172070
||||
Sbjct 205298 CATT 205295
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| || |||||||| || | ||||||||||||||| || || ||||| |||||||| |||
Sbjct 204985 TGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAATT 204926
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| |||| ||||| || || || || ||| || || || || || || || ||
Sbjct 204925 TTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCG 204866
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || | || ||||||||
Sbjct 204865 GTGAGGGTCTTCACAAAGATCTGCAT 204840
>seq51
Length=574565
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || || | || || || | || | || || || || |||||
Sbjct 464396 ATACCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 464337
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| | | || |||| || || |||||||| || | ||||| |||||||||
Sbjct 464336 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 464277
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| || || | || ||||| || |||||||| |||
Sbjct 464276 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCA 464217
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| || |||||||| ||||| | || |||| ||| ||||||||
Sbjct 464216 ACTTCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || || | || | || ||||| | ||||| ||| || ||| ||||| |||
Sbjct 463940 ATACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCT 463881
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || || | || || | || || ||||||||||| | ||||| ||||| |||
Sbjct 463880 GCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGT 463821
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||||||||| || || || | || ||||| || || || || | |||
Sbjct 463820 GGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCG 463761
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || || || || || |||| || || | || ||||||||
Sbjct 463760 ACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711
>seq2834
Length=64598
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || || || | ||||| || | || || | ||||| || || || || | |
Sbjct 889 ATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGT 830
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|||||||| ||||| || |||||||| ||||| || || ||| ||||| || ||
Sbjct 829 TGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTG 770
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || ||||| |||||||| || ||||||||||| |||| ||||| | ||| ||||||
Sbjct 769 TCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 710
Query 172068 ATTTT 172072
|||||
Sbjct 709 ATTTT 705
>seq1427
Length=108667
Score = 104 bits (114), Expect = 4e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || || || | ||||| || | || || | ||||| || || || || | |
Sbjct 17782 ATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGT 17723
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|||||||| ||||| || |||||||| || || || || ||| ||||| || |||
Sbjct 17722 TGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTA 17663
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || ||||| || ||||| || ||||||||||| |||| ||||| | ||| ||||||
Sbjct 17662 TCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 17603
Query 172068 ATTTT 172072
|||||
Sbjct 17602 ATTTT 17598
>seq6
Length=1196388
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || || || | ||||| ||| || || ||||| |||
Sbjct 29929 ATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCT 29988
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | ||| | || || | |||||||||||||| || | | ||| || || ||
Sbjct 29989 GCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGG 30048
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||||||||| ||||| | || |||||| || ||||| || ||
Sbjct 30049 GGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| |||| || ||||||| ||||| | || || |||||
Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
>seq1360
Length=99280
Score = 100 bits (110), Expect = 5e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| || || || || | | ||| ||||| || || || ||||| |
Sbjct 35160 CGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCT 35219
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| || ||| | || ||||| || || ||||| ||||| || ||||| || |
Sbjct 35220 TGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTA 35279
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||||| || |||| ||||| | |||||||||||| ||
Sbjct 35280 TGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTT 35319
>seq20
Length=765589
Score = 93.3 bits (102), Expect = 8e-14
Identities = 170/246 (69%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176
||||| | || |||||||| || | |||||||| | ||||| | || ||
Sbjct 522180 TATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAG 522121
Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235
|| ||||| || |||||||| || | |||||| ||||| || || || ||| ||||| |
Sbjct 522120 AAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCC 522062
Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295
||| ||||| || || || ||||| ||||| || || | || | ||||| |||
Sbjct 522061 AGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACG---ATTC 522005
Query 39296 ATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 39355
| || | ||||||| | ||||||||||| || || || | | |||| ||| ||||
Sbjct 522004 AGCACCATCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTC 521945
Query 39356 TATAGC 39361
|| ||
Sbjct 521944 AATTGC 521939
>seq338
Length=211836
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || ||||| | || || || | ||| || | ||| || || || || || | | |
Sbjct 171307 ATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGC 171366
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| || ||| | || |||||||| || || |||||| || ||||| | || ||
Sbjct 171367 TGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGTTGATGGTG 171426
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| ||||| || || || || ||||||||||| || | ||||| | ||||| |||
Sbjct 171427 TCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAATATTTGC 171486
Query 172068 ATTTT 172072
|||||
Sbjct 171487 ATTTT 171491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905009303588400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |