Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq843 141 2e-28 seq355 134 2e-26 seq51 113 8e-20 seq2834 109 1e-18 seq1427 104 4e-17 seq6 104 4e-17 seq1360 100 5e-16 seq20 93.3 8e-14 seq338 86.0 1e-11 >seq843 Length=130910 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| |||| || | |||||| | || | ||| | || | || || ||| || | Sbjct 120364 TCATGGTACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGT 120305 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | | || | | || ||||||||||| |||||||| ||||| | ||||| | Sbjct 120304 AATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGAT 120245 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 | ||||| || |||||||| ||||| || || |||| ||||| || || || || | Sbjct 120244 CTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATG 120185 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| |||||||| || |||||||| ||||||| ||||| | ||| |||||||| || Sbjct 120184 ATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTT 120127 >seq355 Length=215899 Score = 134 bits (148), Expect = 2e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || |||| |||| || | || ||||| || |||||||||||||| || || Sbjct 205478 AATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCAGCAAAAATCAACCT 205419 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| |||||||| || || ||||| ||| | || |||||| ||||| Sbjct 205418 CTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGT 205359 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| || || || | || |||||||| ||||| || ||||||| ||||| || Sbjct 205358 ATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTTTTAACAAATATTTG 205299 Query 172067 CATT 172070 |||| Sbjct 205298 CATT 205295 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || | ||||||||||||||| || || ||||| |||||||| ||| Sbjct 204985 TGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAATT 204926 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||| ||||| || || || || ||| || || || || || || || || Sbjct 204925 TTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTCCCG 204866 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || |||||||| Sbjct 204865 GTGAGGGTCTTCACAAAGATCTGCAT 204840 >seq51 Length=574565 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | || | || || || || ||||| Sbjct 464396 ATACCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 464337 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || |||| || || |||||||| || | ||||| ||||||||| Sbjct 464336 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 464277 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || | || ||||| || |||||||| ||| Sbjct 464276 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCA 464217 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || |||||||| ||||| | || |||| ||| |||||||| Sbjct 464216 ACTTCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || | || | || ||||| | ||||| ||| || ||| ||||| ||| Sbjct 463940 ATACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCT 463881 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || || ||||||||||| | ||||| ||||| ||| Sbjct 463880 GCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGT 463821 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || | || ||||| || || || || | ||| Sbjct 463820 GGGATCCCTTCTTTATCCTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCG 463761 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || || |||| || || | || |||||||| Sbjct 463760 ACTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711 >seq2834 Length=64598 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || | ||||| || | || || | ||||| || || || || | | Sbjct 889 ATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGT 830 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| || |||||||| ||||| || || ||| ||||| || || Sbjct 829 TGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTG 770 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| |||||||| || ||||||||||| |||| ||||| | ||| |||||| Sbjct 769 TCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 710 Query 172068 ATTTT 172072 ||||| Sbjct 709 ATTTT 705 >seq1427 Length=108667 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || | ||||| || | || || | ||||| || || || || | | Sbjct 17782 ATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGT 17723 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| || |||||||| || || || || ||| ||||| || ||| Sbjct 17722 TGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTA 17663 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| || ||||| || ||||||||||| |||| ||||| | ||| |||||| Sbjct 17662 TCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 17603 Query 172068 ATTTT 172072 ||||| Sbjct 17602 ATTTT 17598 >seq6 Length=1196388 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | ||||| ||| || || ||||| ||| Sbjct 29929 ATTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCT 29988 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | |||||||||||||| || | | ||| || || || Sbjct 29989 GCAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGG 30048 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| | || |||||| || ||||| || || Sbjct 30049 GGAATTCCTTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||| || ||||||| ||||| | || || ||||| Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 >seq1360 Length=99280 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| || || || || | | ||| ||||| || || || ||||| | Sbjct 35160 CGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCT 35219 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| | || ||||| || || ||||| ||||| || ||||| || | Sbjct 35220 TGTCTTGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTA 35279 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||| || |||| ||||| | |||||||||||| || Sbjct 35280 TGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCATCTT 35319 >seq20 Length=765589 Score = 93.3 bits (102), Expect = 8e-14 Identities = 170/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 ||||| | || |||||||| || | |||||||| | ||||| | || || Sbjct 522180 TATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAG 522121 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235 || ||||| || |||||||| || | |||||| ||||| || || || ||| ||||| | Sbjct 522120 AAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCC 522062 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295 ||| ||||| || || || ||||| ||||| || || | || | ||||| ||| Sbjct 522061 AGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACG---ATTC 522005 Query 39296 ATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 39355 | || | ||||||| | ||||||||||| || || || | | |||| ||| |||| Sbjct 522004 AGCACCATCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTC 521945 Query 39356 TATAGC 39361 || || Sbjct 521944 AATTGC 521939 >seq338 Length=211836 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | || || || | ||| || | ||| || || || || || | | | Sbjct 171307 ATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGC 171366 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||| | || |||||||| || || |||||| || ||||| | || || Sbjct 171367 TGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGTTGATGGTG 171426 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || ||||| || || || || ||||||||||| || | ||||| | ||||| ||| Sbjct 171427 TCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAATATTTGC 171486 Query 172068 ATTTT 172072 ||||| Sbjct 171487 ATTTT 171491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905009303588400