Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2053 156 1e-32 seq370 127 6e-24 seq9 116 1e-20 seq76 109 2e-18 seq1046 102 2e-16 >seq2053 Length=75037 Score = 156 bits (172), Expect = 1e-32 Identities = 223/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||||||| || || || |||||||||| || || |||| ||||| | || | Sbjct 64189 CCAACAGCGTCGATCTCATCAATGAAAACCAAGCAAGGAGCATTTTCCTTGGCCTTGTTG 64248 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || ||||| || | ||| || |||| || || |||| || | |||||||| | Sbjct 64249 AACAAATCTCTGACTCTGGAGGCCCCAACTCCTACGAACATCTCAATGAATTCAGAGCCT 64308 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | | ||| | || ||| |||||||||| |||| | || || || ||||| Sbjct 64309 GAGAGGGAGAAGAACGGCACTCCTGCCTCGCCTGCTATTGCCTTAGCTAGCAGGGTCTTC 64368 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 |||||||| |||||||| | || ||||||||||| || | |||||| || | || | Sbjct 64369 CCTGTTCCTGGTGGTCCAACCAACAGAACTCCCTTAGGAATTTTTGCTCCTACTGAAGCA 64428 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 | ||||| ||| | ||||| || || |||||||||| | || | |||||||||||| Sbjct 64429 AACTTCTCTGGGGTTTTTAAGAACTCCACAATTTCCTGGAAGTCCTGCTTTGCCTCATCA 64488 Query 289330 CATCCTGCTACATC 289343 |||||||||||| Sbjct 64489 ACTCCTGCTACATC 64502 >seq370 Length=202669 Score = 127 bits (140), Expect = 6e-24 Identities = 286/423 (68%), Gaps = 24/423 (6%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||| | || || ||||| ||||||||| ||| Sbjct 164695 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGCTCCCTCTCATCATTTCCACC 164636 Query 288999 TCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 || | | || |||||| ||| | ||||||||||||||||| ||||| | Sbjct 164635 TC----------CCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAATAA 164586 Query 289055 AAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 | | | || || | ||| || |||| | |||| || || || || | ||| ||| Sbjct 164585 ACACAATGCAAGGCG-CTTTACTCTTCGCCTTCTCAAACAAATCCCTCACCCTGGAAGCT 164527 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATT 289172 || | ||||||| ||| || ||||| || ||||| | | || || ||| | ||| Sbjct 164526 CCCACACCAACAAACAGCTCCACAAACTCCGAAGCTGCACAC-GAAAAGAACGGCACACC 164468 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 || || || || || |||||||||| | |||||| || |||||||| || ||| | | Sbjct 164467 GGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAG 164408 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 ||| || ||||| | ||| ||||| |||| | || || |||||| |||| || Sbjct 164407 GAGACACCCTTTTGGGATTTTAGCCCCCAATGCAG---TGTACTTATCAGGGTTCTTCAA 164351 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||| || |||| ||||| | ||| || |||| |||| || || ||||| || || Sbjct 164350 AAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTGATCAGCACCGGCAACATCGGCGAA 164291 Query 289350 AGT 289352 || Sbjct 164290 TGT 164288 >seq9 Length=1038350 Score = 116 bits (128), Expect = 1e-20 Identities = 222/319 (70%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||| || ||||||||||| | || || | | |||||| || || | Sbjct 41997 CCAATAGCATCAATCTCATCAATGAAAATAATACTAGGTGCACATTGTCTTGC--TTCCT 41940 Query 289090 --AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | |||||| | ||||| ||||| ||||||| |||| || | || ||||| Sbjct 41939 GGAATAGGTTTCTTACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCAGAGC 41880 Query 289148 CGGATACTTGAATGAATGTT-ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | ||| ||| | ||| | ||| || || |||| | || ||||||||| Sbjct 41879 CAGATA-TGGAAAGAAAGGGCACACCAGATTCCCCAGCAGTTGCCTTAGCTAGAAGTGTC 41821 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || ||||| || ||||| || | || ||| | || || || | |||||| |||| | Sbjct 41820 TTTCCTGTCCCTGGTGGGCCAACCAAGAGAGCACCTTTAGGAATTTTTGCACCCA--AAT 41763 Query 289266 CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 ||| ||| |||| || ||| | || | |||| ||| | ||| | ||||||| Sbjct 41762 CTTCATACTTCTTCGGATTCTGAAGGAAGTGCACAAACTCCATGATTTCTTGCTTTGCCT 41703 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || || ||||| Sbjct 41702 CATCACAACCAGCCACATC 41684 >seq76 Length=445550 Score = 109 bits (120), Expect = 2e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| || | ||| ||||| || ||||| |||||| | |||| | || Sbjct 337252 GGCAATGAGCCCACATTTTTCACATACATGAACCCTGTATGCATCACTTTGGTCAAAAAG 337193 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 | | || |||| | | ||||| || | ||||||||| || |||||||| || || Sbjct 337192 TCTTTCTTTAAGGAAGTGGGCGGCACCATGGGCAATCATACAGTCTCGCTCCATCTCTCC 337133 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || |||||||||||||| |||| | ||||| |||||||| | |||||| | | Sbjct 337132 AAATCGAAGACCACCATCACGAGATCGTCCCTCAGCAGGCTGCCTGGTGAGAATCTGTAC 337073 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||||| | || ||| ||| |||| ||||||||||| || | |||||| Sbjct 337072 AGGACCTCGGCCACGAGAATGAATCTTGTCATCAACCATATGCTTAAGTCTTTGGTAG 337015 >seq1046 Length=115582 Score = 102 bits (112), Expect = 2e-16 Identities = 281/424 (66%), Gaps = 20/424 (5%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| |||| || ||||| | ||| |||||||||||||||||| Sbjct 62642 CTCAAAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTT-- 62585 Query 288996 ACCTCTTGAATCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051 || || ||||| || | ||| ||| | || || ||||||||||| |||| Sbjct 62584 -CC-------TCCCCCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAA 62533 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGA 289109 || | | || |||| ||||| | | || ||| ||| | || | || || || Sbjct 62532 CAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAAAGA--TCGCGCACTCGAGA 62475 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168 |||||| | ||||||| ||||||| || || || || | || | | || | || | | Sbjct 62474 TGCTCCCACACCAACAAACATTTCAACGAACTCTGACCCAGA-AATGGAGAAAAAAGGAA 62416 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 || ||||| || || | ||| | ||||| || ||||| ||||| || || || || Sbjct 62415 CACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAA 62356 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288 | | || || ||||| || | || ||| ||| || | | ||||| | || | Sbjct 62355 CAAGCAGGACACCCTTAGGGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCA 62296 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 ||||| || | ||| || || | ||||| |||||| ||| || |||||| ||| Sbjct 62295 GGAATTCCACTACCTCCATAAAATCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAA 62236 Query 289349 AAGT 289352 |||| Sbjct 62235 AAGT 62232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471606431889726