Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2053 156 1e-32
seq370 127 6e-24
seq9 116 1e-20
seq76 109 2e-18
seq1046 102 2e-16
>seq2053
Length=75037
Score = 156 bits (172), Expect = 1e-32
Identities = 223/314 (71%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||||||| || || || |||||||||| || || |||| ||||| | || |
Sbjct 64189 CCAACAGCGTCGATCTCATCAATGAAAACCAAGCAAGGAGCATTTTCCTTGGCCTTGTTG 64248
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| || ||||| || | ||| || |||| || || |||| || | |||||||| |
Sbjct 64249 AACAAATCTCTGACTCTGGAGGCCCCAACTCCTACGAACATCTCAATGAATTCAGAGCCT 64308
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| | | ||| | || ||| |||||||||| |||| | || || || |||||
Sbjct 64309 GAGAGGGAGAAGAACGGCACTCCTGCCTCGCCTGCTATTGCCTTAGCTAGCAGGGTCTTC 64368
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269
|||||||| |||||||| | || ||||||||||| || | |||||| || | || |
Sbjct 64369 CCTGTTCCTGGTGGTCCAACCAACAGAACTCCCTTAGGAATTTTTGCTCCTACTGAAGCA 64428
Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329
| ||||| ||| | ||||| || || |||||||||| | || | ||||||||||||
Sbjct 64429 AACTTCTCTGGGGTTTTTAAGAACTCCACAATTTCCTGGAAGTCCTGCTTTGCCTCATCA 64488
Query 289330 CATCCTGCTACATC 289343
||||||||||||
Sbjct 64489 ACTCCTGCTACATC 64502
>seq370
Length=202669
Score = 127 bits (140), Expect = 6e-24
Identities = 286/423 (68%), Gaps = 24/423 (6%)
Strand=Plus/Minus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
||| |||||||| || || | ||||| | || || ||||| ||||||||| |||
Sbjct 164695 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGCTCCCTCTCATCATTTCCACC 164636
Query 288999 TCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054
|| | | || |||||| ||| | ||||||||||||||||| ||||| |
Sbjct 164635 TC----------CCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAATAA 164586
Query 289055 AAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113
| | | || || | ||| || |||| | |||| || || || || | ||| |||
Sbjct 164585 ACACAATGCAAGGCG-CTTTACTCTTCGCCTTCTCAAACAAATCCCTCACCCTGGAAGCT 164527
Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATT 289172
|| | ||||||| ||| || ||||| || ||||| | | || || ||| | |||
Sbjct 164526 CCCACACCAACAAACAGCTCCACAAACTCCGAAGCTGCACAC-GAAAAGAACGGCACACC 164468
Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232
|| || || || || |||||||||| | |||||| || |||||||| || ||| | |
Sbjct 164467 GGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAG 164408
Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAA 289289
||| || ||||| | ||| ||||| |||| | || || |||||| |||| ||
Sbjct 164407 GAGACACCCTTTTGGGATTTTAGCCCCCAATGCAG---TGTACTTATCAGGGTTCTTCAA 164351
Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349
||| || |||| ||||| | ||| || |||| |||| || || ||||| || ||
Sbjct 164350 AAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTGATCAGCACCGGCAACATCGGCGAA 164291
Query 289350 AGT 289352
||
Sbjct 164290 TGT 164288
>seq9
Length=1038350
Score = 116 bits (128), Expect = 1e-20
Identities = 222/319 (70%), Gaps = 10/319 (3%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| ||||||||| || ||||||||||| | || || | | |||||| || || |
Sbjct 41997 CCAATAGCATCAATCTCATCAATGAAAATAATACTAGGTGCACATTGTCTTGC--TTCCT 41940
Query 289090 --AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147
|||| | |||||| | ||||| ||||| ||||||| |||| || | || |||||
Sbjct 41939 GGAATAGGTTTCTTACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCAGAGC 41880
Query 289148 CGGATACTTGAATGAATGTT-ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206
| |||| | ||| ||| | ||| | ||| || || |||| | || |||||||||
Sbjct 41879 CAGATA-TGGAAAGAAAGGGCACACCAGATTCCCCAGCAGTTGCCTTAGCTAGAAGTGTC 41821
Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265
|| ||||| || ||||| || | || ||| | || || || | |||||| |||| |
Sbjct 41820 TTTCCTGTCCCTGGTGGGCCAACCAAGAGAGCACCTTTAGGAATTTTTGCACCCA--AAT 41763
Query 289266 CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324
||| ||| |||| || ||| | || | |||| ||| | ||| | |||||||
Sbjct 41762 CTTCATACTTCTTCGGATTCTGAAGGAAGTGCACAAACTCCATGATTTCTTGCTTTGCCT 41703
Query 289325 CATCACATCCTGCTACATC 289343
||||||| || || |||||
Sbjct 41702 CATCACAACCAGCCACATC 41684
>seq76
Length=445550
Score = 109 bits (120), Expect = 2e-18
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||| || || ||||| || | ||| ||||| || ||||| |||||| | |||| | ||
Sbjct 337252 GGCAATGAGCCCACATTTTTCACATACATGAACCCTGTATGCATCACTTTGGTCAAAAAG 337193
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
| | || |||| | | ||||| || | ||||||||| || |||||||| || ||
Sbjct 337192 TCTTTCTTTAAGGAAGTGGGCGGCACCATGGGCAATCATACAGTCTCGCTCCATCTCTCC 337133
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
|| |||||||||||||| |||| | ||||| |||||||| | |||||| | |
Sbjct 337132 AAATCGAAGACCACCATCACGAGATCGTCCCTCAGCAGGCTGCCTGGTGAGAATCTGTAC 337073
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|||||| | || ||| ||| |||| ||||||||||| || | ||||||
Sbjct 337072 AGGACCTCGGCCACGAGAATGAATCTTGTCATCAACCATATGCTTAAGTCTTTGGTAG 337015
>seq1046
Length=115582
Score = 102 bits (112), Expect = 2e-16
Identities = 281/424 (66%), Gaps = 20/424 (5%)
Strand=Plus/Minus
Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995
|| ||| |||||||| |||| || ||||| | ||| ||||||||||||||||||
Sbjct 62642 CTCAAAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTT-- 62585
Query 288996 ACCTCTTGAATCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051
|| || ||||| || | ||| ||| | || || ||||||||||| ||||
Sbjct 62584 -CC-------TCCCCCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAA 62533
Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGA 289109
|| | | || |||| ||||| | | || ||| ||| | || | || || ||
Sbjct 62532 CAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAAAGA--TCGCGCACTCGAGA 62475
Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168
|||||| | ||||||| ||||||| || || || || | || | | || | || | |
Sbjct 62474 TGCTCCCACACCAACAAACATTTCAACGAACTCTGACCCAGA-AATGGAGAAAAAAGGAA 62416
Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228
|| ||||| || || | ||| | ||||| || ||||| ||||| || || || ||
Sbjct 62415 CACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAA 62356
Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288
| | || || ||||| || | || ||| ||| || | | ||||| | || |
Sbjct 62355 CAAGCAGGACACCCTTAGGGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCA 62296
Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348
||||| || | ||| || || | ||||| |||||| ||| || |||||| |||
Sbjct 62295 GGAATTCCACTACCTCCATAAAATCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAA 62236
Query 289349 AAGT 289352
||||
Sbjct 62235 AAGT 62232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471606431889726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |