Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20 120 4e-21 >seq20 Length=765589 Score = 120 bits (132), Expect = 4e-21 Identities = 188/265 (71%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || |||||||| |||||||| || || || | | || || || || Sbjct 521871 GAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGA 521812 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| | ||||| || |||||| ||||||||||| |||||||| Sbjct 521811 ACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAG 521752 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGTG- 869808 || || |||| ||| |||| || || | |||||| | | || | ||||||| Sbjct 521751 AAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGA 521692 Query 869809 -GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || | | ||| || || || || ||||| ||||||| || || || || |||| Sbjct 521691 CGAACATCT-TGCG-AAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTT 521634 Query 869868 TGTACATCTCCCATACTTGCTGGTA 869892 ||||||| ||||| | ||| |||| Sbjct 521633 TGTACATTTCCCAGATTTGTGGGTA 521609 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || | | ||| || || || ||||| || | || ||||||||||||||| Sbjct 522456 TACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATC 522397 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||||||| | ||| |||||| || || || | || | ||| | | Sbjct 522396 CAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAACAGCCTG 522337 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| |||||||||| ||| || | |||||| || | ||| |||| Sbjct 522336 TCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACCAGCTTCACC 522277 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || |||| ||| | || |||||| |||||| ||||| || || Sbjct 522276 GGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATC 522233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106220239679766