Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq843 104 2e-17 seq6 89.7 4e-13 seq51 87.8 1e-12 seq355 86.0 5e-12 >seq843 Length=130910 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||| || |||||||| ||| | ||| || | Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || ||||| |||| |||| |||||| | || |||||| Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 120306 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| ||| | || ||||| | |||| || ||||| Sbjct 120307 AACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 120356 >seq6 Length=1196388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 ||||||||| ||||| || ||||| || || ||||| |||||| | || || || | Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| ||||||| | | || || |||||| ||||||||||| | ||| ||| Sbjct 29871 TGAC---ACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGA 29815 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || | || | ||| || || ||||| ||||||| | || | || ||||| Sbjct 29814 TCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTA 29755 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| || || || || || Sbjct 29754 CAACATCCAGAAGGAGTCAAC 29734 >seq51 Length=574565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || || || || ||| | || || |||||||| ||| | ||| || || | Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||||| || || || ||| | || || || Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || |||| | ||| || || ||||||||||||| ||| || |||| |||||||| Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| ||||| || ||||| |||| Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGT 464375 >seq355 Length=215899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| |||||||| || |||| ||| | Sbjct 204156 ATGCAAATCTTTGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTTT 204215 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| || || || || | ||| || || Sbjct 204216 GACACCATCGACAATGTTAAGACGAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCAG 204275 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| |||||| | || || ||||| Sbjct 204276 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCAGAACGCTCGCTGACTACAAT 204335 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| |||||||| || Sbjct 204336 ATTCAGAAAGAATCGAC 204352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||||||||| ||||| || || || |||||||| ||| | || ||| || Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | |||||| ||| | || || ||||| ||||| ||||| | || || | Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | |||| ||| ||||| ||| ||||||||| | || |||| || |||| Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473 Query 110451 ACATTCAAAAAGAATCTAC 110469 ||||||| || ||||| || Sbjct 205474 ACATTCAGAAGGAATCCAC 205492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412785257184614