Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq843 104 2e-17
seq6 89.7 4e-13
seq51 87.8 1e-12
seq355 86.0 5e-12
>seq843
Length=130910
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || || ||||| |||| || |||||||| ||| | ||| || |
Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | | || ||| ||||| |||||||||||| | || |||
Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|||||| | | || | ||| || ||||| |||| |||| |||||| | || ||||||
Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 120306
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||||| || ||||| ||| | || ||||| | |||| || |||||
Sbjct 120307 AACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 120356
>seq6
Length=1196388
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/201 (71%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328
||||||||| ||||| || ||||| || || ||||| |||||| | || || || |
Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| ||||||| | | || || |||||| ||||||||||| | ||| |||
Sbjct 29871 TGAC---ACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGA 29815
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || || | || | ||| || || ||||| ||||||| | || | || |||||
Sbjct 29814 TCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTA 29755
Query 110449 CAACATTCAAAAAGAATCTAC 110469
|||||| || || || || ||
Sbjct 29754 CAACATCCAGAAGGAGTCAAC 29734
>seq51
Length=574565
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
||||| || || || || ||| | || || |||||||| ||| | ||| || || |
Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||||| | | | | || || ||||||| || || || ||| | || || ||
Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || |||| | ||| || || ||||||||||||| ||| || |||| ||||||||
Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481
||| ||||| ||||| || ||||| ||||
Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGT 464375
>seq355
Length=215899
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| || ||| | ||||| |||||||| || |||| ||| |
Sbjct 204156 ATGCAAATCTTTGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTTT 204215
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||||| || || || || | ||| || ||
Sbjct 204216 GACACCATCGACAATGTTAAGACGAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCAG 204275
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||||||||||||| |||||| | || || |||||
Sbjct 204276 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCAGAACGCTCGCTGACTACAAT 204335
Query 110453 ATTCAAAAAGAATCTAC 110469
||||| |||||||| ||
Sbjct 204336 ATTCAGAAAGAATCGAC 204352
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330
||||||||||||||| ||||| || || || |||||||| ||| | || ||| ||
Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
| |||||| ||| | || || ||||| ||||| ||||| | || || |
Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || | |||| ||| ||||| ||| ||||||||| | || |||| || ||||
Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473
Query 110451 ACATTCAAAAAGAATCTAC 110469
||||||| || ||||| ||
Sbjct 205474 ACATTCAGAAGGAATCCAC 205492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412785257184614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |