Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq51 93.3 3e-14
seq319 87.8 1e-12
seq355 86.0 5e-12
>seq6
Length=1196388
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||||||||| |||| ||||| |||| || | || ||| |
Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099
Query 107616 GATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || || || ||| ||| ||||||||||| | ||| |||||
Sbjct 30098 GATACGATTGATAATGTGAAGACCAAA-ATTCAAGATAAAGAAGGAATTCCCCCAGATCA 30040
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | ||| ||||||||||| ||||| | | ||| | || ||||| ||
Sbjct 30039 GCAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAA 29980
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||| || ||||||||||| | ||| |||||
Sbjct 29979 CATCCAGAAGGAGTCTACTCTCCACTTGGTG 29949
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602
|||||||| || ||||||||||||| || ||||| ||||| || ||||| || | ||
Sbjct 29029 TAAGAGGTGGAA--TGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATCACTTTGGA 28972
Query 107603 AACGGAG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661
||| ||| || ||| | | | || ||| |||||| || || ||||||
Sbjct 28971 GGTTGAGAGCTCT-GACACTATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCA 28913
Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721
| || ||| ||||| || | || | ||| || || ||||| || || | | ||
Sbjct 28912 TTCCTCCGGACCAGCAAAGGTTGATCTTTGCCGGGAAGCAGCTTGATGATGGGAGGACCC 28853
Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781
| ||||| ||||| || |||||||||||||| | ||| ||||| || | ||| |||| |
Sbjct 28852 TTGCGGATTACAATATCCAAAAGGAGTCTACCCTTCACTTGGTGCTGCGCTTGAGAGGAG 28793
Query 107782 G 107782
|
Sbjct 28792 G 28792
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| || ||||| ||||| ||||| |||||| | || || |||
Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|| ||||||| | | || || |||||| || |||||||| | ||| |||||
Sbjct 29871 T-GACACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGATC 29813
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| | || | ||| || || ||||| ||||| | || | || || ||||
Sbjct 29812 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACA 29753
Query 107734 ACATTCAAAAGGAGTCTAC 107752
|||| || |||||||| ||
Sbjct 29752 ACATCCAGAAGGAGTCAAC 29734
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| ||||| || || || ||||| ||| | || ||| |||
Sbjct 28562 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGAGGTTGAGAGCTCA 28503
Query 107615 CGATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|||||||||| | || ||||| ||| || ||||| || || | ||| ||| |
Sbjct 28502 -GATACTGTCGATAATGTGAAAACTAAA-ATCCAGGATAAGGAGGGGATTCCCCCGGACC 28445
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||||||||| || | ||| || || || || ||||| | || |||| |||||||
Sbjct 28444 AGCAGAGACTAATCTTTGCAGGGAAGCAACTCGAGGATGGACGCACCTTGGCTGACTACA 28385
Query 107734 ACATTCAAAAGGAGTCTAC 107752
| ||||| || || || ||
Sbjct 28384 ATATTCAGAAAGAATCCAC 28366
>seq51
Length=574565
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | || ||||| ||||| ||| |||| |||| ||
Sbjct 463483 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGACTTCT 463542
Query 107616 GATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| ||| | | | || || || ||| ||| ||||| || || | || ||| ||
Sbjct 463543 GACACTATTGAGAATGTCAAGACCAAA-ATTCAGGATAAGGAGGGTATCCCACCGGACCA 463601
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | || ||||| ||| |||| || | || ||| | || ||||||||
Sbjct 463602 GCAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCTGACTACAA 463661
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| ||||||||||| ||
Sbjct 463662 CATCCAAAAGGAGTCCAC 463679
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || |||||||||| || || ||| | ||| || ||
Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||| ||||||||||| | || ||| |||
Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||||| ||| || || ||||| ||||| | | || | || ||||| |||
Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||||| ||||||||||| |||| ||||
Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGT 463919
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||| || || ||| | || || |||||||| ||| | ||| || |||
Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || || |||||| ||||| || ||| | || || ||
Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| |||| | ||| || || ||||||||||| | || || |||| || |||||
Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| |||||||| || || ||||| ||||
Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGT 464375
>seq319
Length=213347
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| || ||| | ||||| || ||||||||| | ||| ||| |||
Sbjct 180541 AATGCAAATCTTTGTGAAGACTCTCACAGGGAAGACCATTACCCTTGAAGTCGAGAGCTC 180600
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|||||| | | | | || || |||||| || || || || | ||| || |
Sbjct 180601 -CGATACCATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 180659
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| | || | || || || ||||| ||||| | | || | || |||||||
Sbjct 180660 AGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTTGCCGACTACA 180719
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||| || ||||||||||| | ||| |||||
Sbjct 180720 ACATCCAGAAGGAGTCTACCCTTCACTTGGTG 180751
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613
|||||| || ||||||||||| ||||||| || || || ||| ||||| || | |||
Sbjct 180313 AATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTC 180372
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||| || | | | | || || || ||| || || ||||| | ||| || |
Sbjct 180373 -CGACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACC 180431
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||| || || || | ||| || || ||||| ||||| | | ||| | || |||||||
Sbjct 180432 AGCAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACA 180491
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||| || |||||||| || | ||| | |||
Sbjct 180492 ACATCCAGAAGGAGTCCACTCTTCACCTTGTG 180523
>seq355
Length=215899
Score = 86.0 bits (94), Expect = 5e-12
Identities = 181/268 (68%), Gaps = 9/268 (3%)
Strand=Plus/Plus
Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602
|||||||| || ||||||| || ||||| ||||| || || || || || || | ||
Sbjct 205057 TAAGAGGTGGAA--TGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGA 205114
Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662
||| | || || | | | | || || ||||||| ||||| || ||| |
Sbjct 205115 GGTCGAGAGTTCAGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCAT 205174
Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722
||| |||||||| || | || | ||| || || ||||| ||||| | | || |
Sbjct 205175 TCCCCCAGATCAGCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCT 205234
Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| |||||||| || |||||||||||||| | ||| ||||| | | || |||| ||
Sbjct 205235 TGCTGACTACAATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 205294
Query 107783 AAATAATAAAAATATTTGTATTTAAAAC 107810
||| ||||||||| |||||||
Sbjct 205295 ----AATGCAAATATTTG---TTAAAAC 205315
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| ||||| || || || |||||||| ||| | || ||| |||
Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|||||| ||| | || || ||||| || || ||||| | || || |
Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| | |||| ||| ||||| ||| ||||||| | || |||| |||||||
Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473
Query 107734 ACATTCAAAAGGAGTCTAC 107752
||||||| ||||| || ||
Sbjct 205474 ACATTCAGAAGGAATCCAC 205492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398822363039422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |