Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq51 93.3 3e-14 seq319 87.8 1e-12 seq355 86.0 5e-12 >seq6 Length=1196388 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||||||||| |||| ||||| |||| || | || ||| | Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099 Query 107616 GATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| ||| ||||||||||| | ||| ||||| Sbjct 30098 GATACGATTGATAATGTGAAGACCAAA-ATTCAAGATAAAGAAGGAATTCCCCCAGATCA 30040 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||||||||| ||||| | | ||| | || ||||| || Sbjct 30039 GCAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAA 29980 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | ||| ||||| Sbjct 29979 CATCCAGAAGGAGTCTACTCTCCACTTGGTG 29949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||| || ||||| ||||| || ||||| || | || Sbjct 29029 TAAGAGGTGGAA--TGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATCACTTTGGA 28972 Query 107603 AACGGAG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661 ||| ||| || ||| | | | || ||| |||||| || || |||||| Sbjct 28971 GGTTGAGAGCTCT-GACACTATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCA 28913 Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721 | || ||| ||||| || | || | ||| || || ||||| || || | | || Sbjct 28912 TTCCTCCGGACCAGCAAAGGTTGATCTTTGCCGGGAAGCAGCTTGATGATGGGAGGACCC 28853 Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 | ||||| ||||| || |||||||||||||| | ||| ||||| || | ||| |||| | Sbjct 28852 TTGCGGATTACAATATCCAAAAGGAGTCTACCCTTCACTTGGTGCTGCGCTTGAGAGGAG 28793 Query 107782 G 107782 | Sbjct 28792 G 28792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||||| ||||| ||||| |||||| | || || ||| Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || ||||||| | | || || |||||| || |||||||| | ||| ||||| Sbjct 29871 T-GACACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGATC 29813 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| || || ||||| ||||| | || | || || |||| Sbjct 29812 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACA 29753 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| || |||||||| || Sbjct 29752 ACATCCAGAAGGAGTCAAC 29734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| ||||| || || || ||||| ||| | || ||| ||| Sbjct 28562 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGAGGTTGAGAGCTCA 28503 Query 107615 CGATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||||||| | || ||||| ||| || ||||| || || | ||| ||| | Sbjct 28502 -GATACTGTCGATAATGTGAAAACTAAA-ATCCAGGATAAGGAGGGGATTCCCCCGGACC 28445 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | ||| || || || || ||||| | || |||| ||||||| Sbjct 28444 AGCAGAGACTAATCTTTGCAGGGAAGCAACTCGAGGATGGACGCACCTTGGCTGACTACA 28385 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | ||||| || || || || Sbjct 28384 ATATTCAGAAAGAATCCAC 28366 >seq51 Length=574565 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| ||| |||| |||| || Sbjct 463483 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGACTTCT 463542 Query 107616 GATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || || ||| ||| ||||| || || | || ||| || Sbjct 463543 GACACTATTGAGAATGTCAAGACCAAA-ATTCAGGATAAGGAGGGTATCCCACCGGACCA 463601 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| ||| |||| || | || ||| | || |||||||| Sbjct 463602 GCAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCTGACTACAA 463661 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 463662 CATCCAAAAGGAGTCCAC 463679 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || |||||||||| || || ||| | ||| || || Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||||||||| | || ||| ||| Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| || || ||||| ||||| | | || | || ||||| ||| Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||||||||| |||| |||| Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGT 463919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||| | || || |||||||| ||| | ||| || ||| Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| || ||| | || || || Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| |||| | ||| || || ||||||||||| | || || |||| || ||||| Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| |||||||| || || ||||| |||| Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGT 464375 >seq319 Length=213347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||| | ||||| || ||||||||| | ||| ||| ||| Sbjct 180541 AATGCAAATCTTTGTGAAGACTCTCACAGGGAAGACCATTACCCTTGAAGTCGAGAGCTC 180600 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | | || || |||||| || || || || | ||| || | Sbjct 180601 -CGATACCATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 180659 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | || || || ||||| ||||| | | || | || ||||||| Sbjct 180660 AGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTTGCCGACTACA 180719 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || ||||||||||| | ||| ||||| Sbjct 180720 ACATCCAGAAGGAGTCTACCCTTCACTTGGTG 180751 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613 |||||| || ||||||||||| ||||||| || || || ||| ||||| || | ||| Sbjct 180313 AATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTC 180372 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || || || ||| || || ||||| | ||| || | Sbjct 180373 -CGACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACC 180431 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || || | ||| || || ||||| ||||| | | ||| | || ||||||| Sbjct 180432 AGCAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACA 180491 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || |||||||| || | ||| | ||| Sbjct 180492 ACATCCAGAAGGAGTCCACTCTTCACCTTGTG 180523 >seq355 Length=215899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 181/268 (68%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||| || ||||| ||||| || || || || || || | || Sbjct 205057 TAAGAGGTGGAA--TGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGA 205114 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 ||| | || || | | | | || || ||||||| ||||| || ||| | Sbjct 205115 GGTCGAGAGTTCAGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCAT 205174 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 ||| |||||||| || | || | ||| || || ||||| ||||| | | || | Sbjct 205175 TCCCCCAGATCAGCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCT 205234 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| || |||||||||||||| | ||| ||||| | | || |||| || Sbjct 205235 TGCTGACTACAATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 205294 Query 107783 AAATAATAAAAATATTTGTATTTAAAAC 107810 ||| ||||||||| ||||||| Sbjct 205295 ----AATGCAAATATTTG---TTAAAAC 205315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| || || || |||||||| ||| | || ||| ||| Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| ||| | || || ||||| || || ||||| | || || | Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | |||| ||| ||||| ||| ||||||| | || |||| ||||||| Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| ||||| || || Sbjct 205474 ACATTCAGAAGGAATCCAC 205492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398822363039422