Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq843 100 4e-16 seq338 89.7 8e-13 seq355 87.8 3e-12 seq6 84.2 3e-11 >seq843 Length=130910 Score = 100 bits (110), Expect = 4e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || ||||| || || | || || ||| ||| Sbjct 120131 TGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCATCG- 120189 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| |||| || || ||| ||||||||||| ||||| |||||| Sbjct 120190 GACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 120249 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| || |||||||| || ||| ||||| | ||||||| || Sbjct 120250 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAAC 120309 Query 146211 ATACAAAAAGAATCGAC 146227 || || || |||||||| Sbjct 120310 ATTCAGAAGGAATCGAC 120326 >seq338 Length=211836 Score = 89.7 bits (98), Expect = 8e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| | || || ||||| || || |||| || ||| || | Sbjct 171487 TGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAATCTAGTG 171428 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| || ||||||||||||| ||||||||||| Sbjct 171427 ACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAACCCGATCAAC 171368 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| || || || || ||| | || || || | || || | ||||| || | Sbjct 171367 AGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCCGATTACAACA 171308 Query 146212 TACAAAAAG 146220 | || |||| Sbjct 171307 TCCAGAAAG 171299 >seq355 Length=215899 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || || || ||||| || |||| || ||| || Sbjct 204841 TGCAGATCTTTGTGAAGACCCTCACCGGGAAGACAATCACCCTTGAGGTTGAAAGCTCCG 204900 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| |||| ||||| ||| ||| ||||||||||| || || |||| Sbjct 204901 ACACCATTGACAATGTCAAAACCAAAATTCAAGATAAGGAAGGCATTCCCCCTGACCAAC 204960 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || | || ||| | || | | ||||| | | Sbjct 204961 AGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACCCTTGCTGATTACACCA 205020 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || || || || || ||||| | ||| | || |||||||| || | ||||||| Sbjct 205021 TTCAGAAGGAGTCAACGCTCCATCTTGTACTCCGTTTAAGAGGTGGAATGCAAATATT 205078 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || || || || || || || ||| | || || || | | Sbjct 205069 TGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTCAG 205128 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||| || |||||||| || ||||| | Sbjct 205129 ACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCAGC 205188 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || |||||||| || || | || ||| || || | | || || |||| Sbjct 205189 AAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAATA 205248 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| || || || | || || || | || ||||||||||| | ||||||| Sbjct 205249 TCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAATGCAAATATT 205306 >seq6 Length=1196388 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| |||||||| || || |||||| | || || || || Sbjct 29245 TGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCCG 29186 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || | ||||| ||| || || || || || || ||||| | Sbjct 29185 ACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAGC 29126 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || || | || ||| | || | | ||||| |||| Sbjct 29125 AGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAATA 29066 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || ||||| | || | ||||||||||| || Sbjct 29065 TCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGG 29020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786056356358160