Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq843 100 4e-16
seq338 89.7 8e-13
seq355 87.8 3e-12
seq6 84.2 3e-11
>seq843
Length=130910
Score = 100 bits (110), Expect = 4e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
|||| || ||| | ||||| |||| || ||||| || || | || || ||| |||
Sbjct 120131 TGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCATCG- 120189
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || | ||||| |||| || || ||| ||||||||||| ||||| ||||||
Sbjct 120190 GACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 120249
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | || ||||| || |||||||| || ||| ||||| | ||||||| ||
Sbjct 120250 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAAC 120309
Query 146211 ATACAAAAAGAATCGAC 146227
|| || || ||||||||
Sbjct 120310 ATTCAGAAGGAATCGAC 120326
>seq338
Length=211836
Score = 89.7 bits (98), Expect = 8e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | ||||| | || || ||||| || || |||| || ||| || |
Sbjct 171487 TGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAATCTAGTG 171428
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||| || |||||| || ||||||||||||| |||||||||||
Sbjct 171427 ACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAACCCGATCAAC 171368
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | ||||| || || || || ||| | || || || | || || | ||||| || |
Sbjct 171367 AGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCCGATTACAACA 171308
Query 146212 TACAAAAAG 146220
| || ||||
Sbjct 171307 TCCAGAAAG 171299
>seq355
Length=215899
Score = 87.8 bits (96), Expect = 3e-12
Identities = 162/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || | || || || ||||| || |||| || ||| ||
Sbjct 204841 TGCAGATCTTTGTGAAGACCCTCACCGGGAAGACAATCACCCTTGAGGTTGAAAGCTCCG 204900
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| |||| ||||| ||| ||| ||||||||||| || || ||||
Sbjct 204901 ACACCATTGACAATGTCAAAACCAAAATTCAAGATAAGGAAGGCATTCCCCCTGACCAAC 204960
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||||| || ||||| || || || | || ||| | || | | ||||| | |
Sbjct 204961 AGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACCCTTGCTGATTACACCA 205020
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269
| || || || || || ||||| | ||| | || |||||||| || | |||||||
Sbjct 205021 TTCAGAAGGAGTCAACGCTCCATCTTGTACTCCGTTTAAGAGGTGGAATGCAAATATT 205078
Score = 87.8 bits (96), Expect = 3e-12
Identities = 162/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | || || || || || || || || ||| | || || || | |
Sbjct 205069 TGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTCAG 205128
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || || || ||| ||| || |||||||| || ||||| |
Sbjct 205129 ACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCAGC 205188
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||| | || |||||||| || || | || ||| || || | | || || ||||
Sbjct 205189 AAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAATA 205248
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269
| ||||| || || || | || || || | || ||||||||||| | |||||||
Sbjct 205249 TCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAATGCAAATATT 205306
>seq6
Length=1196388
Score = 84.2 bits (92), Expect = 3e-11
Identities = 154/226 (68%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| |||||||| || || |||||| | || || || ||
Sbjct 29245 TGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCCG 29186
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | ||||| || | ||||| ||| || || || || || || ||||| |
Sbjct 29185 ACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAGC 29126
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | || ||||| || || || | || ||| | || | | ||||| ||||
Sbjct 29125 AGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAATA 29066
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || || || || || ||||| | || | ||||||||||| ||
Sbjct 29065 TCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGG 29020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786056356358160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |