Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq814 104 3e-17
seq71 87.8 2e-12
seq220 86.0 8e-12
>seq814
Length=133700
Score = 104 bits (114), Expect = 3e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 178251 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAAC 178310
||||| || || |||||||| |||||| | |||||||| |||||||| |||||||||
Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245
Query 178311 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACC 178367
|| |||| | ||||||||| | || || ||||||||||| || || ||||| |||
Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACC 56188
>seq71
Length=458239
Score = 87.8 bits (96), Expect = 2e-12
Identities = 167/246 (68%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576
||||| ||| |||||| |||||||| ||||| || || || || || |||| |
Sbjct 141219 TTTGAGGCTGCCGATGATGCTTACATCCTCGATGCAGCGGAAGAGGCTGGGGTTGACTTG 141160
Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636
|| ||||| || | || ||||| || || |||||||||||| | | || |||||
Sbjct 141159 CCTTACTCATGCAGGGCAGGTGCCTGCTCAACCTGTGCTGGTCAGCTCGTAAGTGGAACA 141100
Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696
|| |||||||| || || |||||||| || | ||||| | ||| | | | |
Sbjct 141099 GTTGATCAGTCCGATGGATCCTTCCTTGACGACAATCAAATGGACAAAGGTTATTTGCTC 141040
Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTA 138756
|| || || | ||||| ||| || ||| |||| | || | || |||| ||| ||
Sbjct 141039 ACGTGTGTTTCTTACCCGCGATCAGACTGTGTAATCCATACCCACAAGGAGGGCGATCTT 140980
Query 138757 TACTGA 138762
||||||
Sbjct 140979 TACTGA 140974
>seq220
Length=268034
Score = 86.0 bits (94), Expect = 8e-12
Identities = 169/246 (69%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576
||||| || | ||||| |||| | | ||||||||||| || | ||| |||||| |
Sbjct 141942 TTTGAGTGCCCGGATGACGTGTACGTGTTGGATGCTGCTGAAGAGGTAGGGATTGATTTG 142001
Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAA-ATTAGTTGAAGGAAC 138635
|| ||||| ||| | ||||| | || || | || || ||||| ||| | || ||
Sbjct 142002 CCTTACTCTTGTAGGGCTGGCTCGTGCTCCTCATGCGCCGGTAAGCTTACGT-CTGGTAC 142060
Query 138636 TGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCAT 138695
| | || |||||||| || || ||| | ||||||||||| ||||| || |||| | |
Sbjct 142061 TCTTGACCAGTCTGATCAATCCTTCTTAGATGATGACCAGATTGCTGCTGGATGGGTTCT 142120
Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755
||||| | || ||||| ||| || ||||| ||| | || ||||| || ||
Sbjct 142121 TACTTGTGCTGCTTACCCTGTTAGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCT 142180
Query 138756 ATACTG 138761
|||||
Sbjct 142181 -TACTG 142185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605582421733680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |