Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq814 104 3e-17 seq71 87.8 2e-12 seq220 86.0 8e-12 >seq814 Length=133700 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 178251 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAAC 178310 ||||| || || |||||||| |||||| | |||||||| |||||||| ||||||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 178311 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACC 178367 || |||| | ||||||||| | || || ||||||||||| || || ||||| ||| Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACC 56188 >seq71 Length=458239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| ||| |||||| |||||||| ||||| || || || || || |||| | Sbjct 141219 TTTGAGGCTGCCGATGATGCTTACATCCTCGATGCAGCGGAAGAGGCTGGGGTTGACTTG 141160 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | || ||||| || || |||||||||||| | | || ||||| Sbjct 141159 CCTTACTCATGCAGGGCAGGTGCCTGCTCAACCTGTGCTGGTCAGCTCGTAAGTGGAACA 141100 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || |||||||| || || |||||||| || | ||||| | ||| | | | | Sbjct 141099 GTTGATCAGTCCGATGGATCCTTCCTTGACGACAATCAAATGGACAAAGGTTATTTGCTC 141040 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTA 138756 || || || | ||||| ||| || ||| |||| | || | || |||| ||| || Sbjct 141039 ACGTGTGTTTCTTACCCGCGATCAGACTGTGTAATCCATACCCACAAGGAGGGCGATCTT 140980 Query 138757 TACTGA 138762 |||||| Sbjct 140979 TACTGA 140974 >seq220 Length=268034 Score = 86.0 bits (94), Expect = 8e-12 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || | ||||| |||| | | ||||||||||| || | ||| |||||| | Sbjct 141942 TTTGAGTGCCCGGATGACGTGTACGTGTTGGATGCTGCTGAAGAGGTAGGGATTGATTTG 142001 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAA-ATTAGTTGAAGGAAC 138635 || ||||| ||| | ||||| | || || | || || ||||| ||| | || || Sbjct 142002 CCTTACTCTTGTAGGGCTGGCTCGTGCTCCTCATGCGCCGGTAAGCTTACGT-CTGGTAC 142060 Query 138636 TGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCAT 138695 | | || |||||||| || || ||| | ||||||||||| ||||| || |||| | | Sbjct 142061 TCTTGACCAGTCTGATCAATCCTTCTTAGATGATGACCAGATTGCTGCTGGATGGGTTCT 142120 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| | || ||||| ||| || ||||| ||| | || ||||| || || Sbjct 142121 TACTTGTGCTGCTTACCCTGTTAGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCT 142180 Query 138756 ATACTG 138761 ||||| Sbjct 142181 -TACTG 142185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605582421733680