Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq355 98.7 1e-15 seq843 84.2 2e-11 seq6 82.4 7e-11 >seq355 Length=215899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| |||||| | || || |||| |||||| || ||||| || ||||| || Sbjct 205294 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 205235 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| || ||||| || || || ||| |||| | | ||||||||| || || Sbjct 205234 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGA 205175 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || ||| ||| || | | || | ||||||| || || Sbjct 205174 ATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGACC 205115 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||| || ||||| || || |||||||||||||| Sbjct 205114 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 205068 >seq843 Length=130910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| || ||||| || || ||||||||||| | ||| || ||||| | ||| Sbjct 120333 ATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTG 120274 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||| |||||| |||| | ||||| ||||| || || |||||||||||||| || || Sbjct 120273 TTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 120214 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||| | | || | ||||| | | ||| ||||| | || | || || || || Sbjct 120213 GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGT 120154 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| || ||||| Sbjct 120153 TAGGGTTTTCACGAAAATCTGCAT 120130 >seq6 Length=1196388 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || ||||| |||||||||||| |||||||||| |||||||| || || || |||||||| Sbjct 30004 TCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTA 30063 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || |||||| || | | || | ||| || | || || |||| ||| | Sbjct 30064 TCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATG 30123 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||||| || | ||||| || || |||||||| Sbjct 30124 GACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488475616053600