Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq20 86.0 1e-11 seq1631 84.2 5e-11 >seq20 Length=765589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT--TTTTC 131853 |||| ||||| ||||| |||||| || |||||| |||| | | | ||| ||| | Sbjct 521961 TTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATT---GATGGTGCTG--AATCGTTTGC 522015 Query 131854 TACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC 131913 | || | | |||||||||||||||||||| || ||||| || || |||||| | Sbjct 522016 TGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTC 522075 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 ||||| ||||| || |||||||| || ||||| || | | || || || | | || Sbjct 522076 CATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGAT 522135 Query 131974 CTCGAGAGATGAAG 131987 ||| |||| |||| Sbjct 522136 ATCGCGAGACGAAG 522149 >seq1631 Length=93028 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/186 (72%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||||||| || | || || |||||| | || || || |||||||||| Sbjct 69047 GACATTTGAATGATGGGGACTTTGTACTTTTCAATCGACAGCCCAGTCTTCATAAAATGT 68988 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| ||| | | |||| || || || | |||||| |||| || | | Sbjct 68987 CCATTATGGGTCACCGAAT-AAAG-ATCATGCCTTATTCTACATTTAGATTGAACTT--G 68932 Query 305425 TGCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | || |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || Sbjct 68931 T-CTGTTACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCC 68873 Query 305482 TCAATC 305487 ||| || Sbjct 68872 TCAGTC 68867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186642522775278