Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1360 114 8e-21 seq355 113 3e-20 seq6 105 4e-18 seq843 104 2e-17 seq338 104 2e-17 seq1427 93.3 3e-14 seq319 93.3 3e-14 seq51 93.3 3e-14 >seq1360 Length=99280 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| |||| ||| | ||||| || || || ||| || || |||||||| |||| Sbjct 35088 CACCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 35147 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| || |||| || | ||||||||||| || |||| ||||||||| ||| | | Sbjct 35148 CGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGG 35207 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| ||| | ||||| ||||| Sbjct 35208 GAATGCCTTCCTTGTCTTGGATCTT-AGTCTTCACATTGTCGATCGTGTCTGAGGATTCA 35266 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| || |||| ||||| || || |||||||| Sbjct 35267 ACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 35316 >seq355 Length=215899 Score = 113 bits (124), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || || ||| || || ||||||||||| | Sbjct 204838 CCACCTCTTAGACGGAGAACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 204779 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||||||||||| ||||| | |||||| ||| | || Sbjct 204778 AGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 204719 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | |||||| ||||| ||||| |||| ||||| || | ||||| ||| ||| Sbjct 204718 ATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTATCAATAGTGTCAGAGCT---TTC 204663 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || ||||||||||||||||| Sbjct 204662 AACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTTACAAAGATCTGCAT 204612 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || | || || || ||| || || ||||||||||| | Sbjct 204610 CCACCTCTTAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCA 204551 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 204550 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 204491 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| ||||| || | || | ||||| || || Sbjct 204490 ATACCTTCCTTGTCTTGAATTTT-TGTTTTGACGTTATCAATAGTGTCAGAACTCTCAAC 204432 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 204431 TTCAAGGGTGATAGTCTTCCCGGTGAGGGTCTTAACAAAAATCTGCAT 204384 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||| | || | ||| || || ||| || || ||| ||||||| | Sbjct 205066 CCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCA 205007 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || ||||| ||||| |||| | ||| || || | || Sbjct 205006 AGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGA 204947 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| |||| |||| |||| ||||||| ||| || Sbjct 204946 ATGCCTTCCTTATCTTGAATTTTG-GTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 204888 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 204887 CTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840 >seq6 Length=1196388 Score = 105 bits (116), Expect = 4e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || || || | ||| | ||| || || ||| || || ||||||||||| | Sbjct 29703 ACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 29762 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || || || ||||| ||||| | ||||||||| | || Sbjct 29763 AAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 29822 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||||||||| ||| || || | ||||| ||| || ||||| ||| || Sbjct 29823 GATTCCTTCTTTGTCCTGAATCTT-GGTCTTAACATTGTCGACAGTGTCAGAGCT---TT 29878 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 29879 CAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCAT 29930 >seq843 Length=130910 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| || || || || || ||||||||||| | ||||| | | | || || Sbjct 120339 CACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 120280 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||||||||| || ||||| || || || || |||||| | || | ||||||||||| Sbjct 120279 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 120220 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| |||| ||| | ||||| |||||| || || | || || |||| Sbjct 120219 GATCTT-GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTT 120161 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTT 33762 | || |||| ||||| || || |||||||| ||| | |||| Sbjct 120160 TCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTTGAGGAGTTT 120117 >seq338 Length=211836 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||||| || || || | ||| || | ||| |||||||| || | Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | ||||| ||||| | | | ||||||||||| |||||| | | |||| | Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTT-AGCCTTGACATTG 171417 Query 33680 -TCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | | |||||| || ||||| || |||| ||||| |||||||| || | ||||| ||| Sbjct 171418 TTGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACA 171477 Query 33739 AAGATCTGCAT 33749 || || ||||| Sbjct 171478 AATATTTGCAT 171488 >seq1427 Length=108667 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| |||| Sbjct 17829 CACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 17770 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| | || || | ||||||||||| || || | ||| || || ||| | | Sbjct 17769 CTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTG 17710 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || || | || |||| ||| | ||| ||| ||||| Sbjct 17709 GGATGCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTATCGGAGGATTCG 17651 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 17650 ACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601 >seq319 Length=213347 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||| | || |||||| ||| || || |||||||| |||| | Sbjct 180540 CCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 180481 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||||||||| || | | ||||| ||| | || Sbjct 180480 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 180421 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | | || | ||| | ||||||| ||| || Sbjct 180420 ATTCCTTCCTTGTCTTGAATTTT-GGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGAC 180362 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||||| ||||| |||||||||||||| Sbjct 180361 TTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 169/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || |||||||| | |||||| || || || ||| || || || Sbjct 181236 AAAATCTGCATTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATA 181177 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || | | | || |||| || || |||||||||||||| | |||| Sbjct 181176 TTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGC 181117 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||| ||||| ||| ||| | | |||| ||| | |||||| Sbjct 181116 TGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTC-GCCTTGACATTGTCAATGGTGTC 181058 Query 33690 GCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | | | || || || | ||||| || || || || || || || || || ||||||| Sbjct 181057 -CGAGCTCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCA 180999 Query 33749 T 33749 | Sbjct 180998 T 180998 >seq51 Length=574565 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||||||| | |||||||| ||||| ||| || || ||||| || || | Sbjct 463938 ACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGC 463879 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || |||||||| | | |||||| || | || Sbjct 463878 AAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGG 463819 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||||| || || ||| |||| ||| ||| |||||| | ||| | Sbjct 463818 GATCCCTTCTTTATCCTGGATCTTCGTCTTCA-CATTCTCAATGGTGTCAGAAGTTTCGA 463760 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || ||||||| || || ||||||||||||||| Sbjct 463759 CTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCATA 463710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328659139916160