Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1360 114 8e-21
seq355 113 3e-20
seq6 105 4e-18
seq843 104 2e-17
seq338 104 2e-17
seq1427 93.3 3e-14
seq319 93.3 3e-14
seq51 93.3 3e-14
>seq1360
Length=99280
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| |||| ||| | ||||| || || || ||| || || |||||||| ||||
Sbjct 35088 CACCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 35147
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|||||| || |||| || | ||||||||||| || |||| ||||||||| ||| | |
Sbjct 35148 CGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGG 35207
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || || | |||| ||| | ||||| |||||
Sbjct 35208 GAATGCCTTCCTTGTCTTGGATCTT-AGTCTTCACATTGTCGATCGTGTCTGAGGATTCA 35266
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || ||||| || |||| ||||| || || ||||||||
Sbjct 35267 ACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 35316
>seq355
Length=215899
Score = 113 bits (124), Expect = 3e-20
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | |||| || || || ||| || || ||||||||||| |
Sbjct 204838 CCACCTCTTAGACGGAGAACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 204779
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || || | |||||||||||||| ||||| | |||||| ||| | ||
Sbjct 204778 AGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 204719
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| |||||| ||||| ||||| |||| ||||| || | ||||| ||| |||
Sbjct 204718 ATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTATCAATAGTGTCAGAGCT---TTC 204663
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || | || |||||||||||||||||
Sbjct 204662 AACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTTACAAAGATCTGCAT 204612
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | || | || || || ||| || || ||||||||||| |
Sbjct 204610 CCACCTCTTAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGCA 204551
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || || | || ||||||||||| ||||| | |||||| ||| | ||
Sbjct 204550 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 204491
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||| ||||| |||||| ||||| || | || | ||||| || ||
Sbjct 204490 ATACCTTCCTTGTCTTGAATTTT-TGTTTTGACGTTATCAATAGTGTCAGAACTCTCAAC 204432
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||| ||||||||
Sbjct 204431 TTCAAGGGTGATAGTCTTCCCGGTGAGGGTCTTAACAAAAATCTGCAT 204384
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| ||||| | || | ||| || || ||| || || ||| ||||||| |
Sbjct 205066 CCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCA 205007
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || || | || ||||| ||||| |||| | ||| || || | ||
Sbjct 205006 AGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGA 204947
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||||| || || |||||| |||| |||| |||| ||||||| ||| ||
Sbjct 204946 ATGCCTTCCTTATCTTGAATTTTG-GTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 204888
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 204887 CTCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 204840
>seq6
Length=1196388
Score = 105 bits (116), Expect = 4e-18
Identities = 165/232 (71%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| || || || | ||| | ||| || || ||| || || ||||||||||| |
Sbjct 29703 ACCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 29762
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| | || || | || || || ||||| ||||| | ||||||||| | ||
Sbjct 29763 AAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 29822
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||||||||||| ||| || || | ||||| ||| || ||||| ||| ||
Sbjct 29823 GATTCCTTCTTTGTCCTGAATCTT-GGTCTTAACATTGTCGACAGTGTCAGAGCT---TT 29878
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || ||||| ||||| || || ||||||||||| |||||
Sbjct 29879 CAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCAT 29930
>seq843
Length=130910
Score = 104 bits (114), Expect = 2e-17
Identities = 159/224 (71%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| ||| || || || || || ||||||||||| | ||||| | | | || ||
Sbjct 120339 CACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 120280
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
||||||||| || ||||| || || || || |||||| | || | |||||||||||
Sbjct 120279 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 120220
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || |||| |||| ||| | ||||| |||||| || || | || || ||||
Sbjct 120219 GATCTT-GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTT 120161
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTT 33762
| || |||| ||||| || || |||||||| ||| | ||||
Sbjct 120160 TCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTTGAGGAGTTT 120117
>seq338
Length=211836
Score = 104 bits (114), Expect = 2e-17
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619
|||| || ||||||||||||| || || || | ||| || | ||| |||||||| || |
Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358
Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679
| | ||||| ||||| | | | ||||||||||| |||||| | | |||| |
Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTT-AGCCTTGACATTG 171417
Query 33680 -TCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738
| | |||||| || ||||| || |||| ||||| |||||||| || | ||||| |||
Sbjct 171418 TTGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACA 171477
Query 33739 AAGATCTGCAT 33749
|| || |||||
Sbjct 171478 AATATTTGCAT 171488
>seq1427
Length=108667
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | || | || || ||| ||| || || |||||||| ||||
Sbjct 17829 CACCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 17770
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| ||||| | || || | ||||||||||| || || | ||| || || ||| | |
Sbjct 17769 CTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTG 17710
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| || || | || |||| ||| | ||| ||| |||||
Sbjct 17709 GGATGCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTATCGGAGGATTCG 17651
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || |||||||| |||| ||||| || |||||||||||
Sbjct 17650 ACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601
>seq319
Length=213347
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || || | ||| | ||| | || |||||| ||| || || |||||||| |||| |
Sbjct 180540 CCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 180481
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || || | || ||||||||||| || | | ||||| ||| | ||
Sbjct 180480 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 180421
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| |||||| | | || | ||| | ||||||| ||| ||
Sbjct 180420 ATTCCTTCCTTGTCTTGAATTTT-GGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGAC 180362
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || ||||||| ||||| ||||||||||||||
Sbjct 180361 TTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314
Score = 93.3 bits (102), Expect = 3e-14
Identities = 169/241 (70%), Gaps = 6/241 (2%)
Strand=Plus/Minus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || || || |||||||| | |||||| || || || ||| || || ||
Sbjct 181236 AAAATCTGCATTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATA 181177
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
|||||||| | || || | | | || |||| || || |||||||||||||| | ||||
Sbjct 181176 TTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGC 181117
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|| ||| | || | ||||| ||||| ||| ||| | | |||| ||| | ||||||
Sbjct 181116 TGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTC-GCCTTGACATTGTCAATGGTGTC 181058
Query 33690 GCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748
| | | || || || | ||||| || || || || || || || || || |||||||
Sbjct 181057 -CGAGCTCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCA 180999
Query 33749 T 33749
|
Sbjct 180998 T 180998
>seq51
Length=574565
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| || |||||||| | |||||||| ||||| ||| || || ||||| || || |
Sbjct 463938 ACCTCCCCTCAAACGGAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGC 463879
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | || || || |||||||| | | |||||| || | ||
Sbjct 463878 AAGAGTCCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGG 463819
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| |||||||| || || ||| |||| ||| ||| |||||| | ||| |
Sbjct 463818 GATCCCTTCTTTATCCTGGATCTTCGTCTTCA-CATTCTCAATGGTGTCAGAAGTTTCGA 463760
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | |||||||| || ||||||| || || |||||||||||||||
Sbjct 463759 CTTCCAAGGTGATCGTCTTGCCTGTTAGGGTCTTGACAAAGATCTGCATA 463710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328659139916160
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