Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1427 98.7 9e-16
seq2834 95.1 1e-14
seq6 89.7 5e-13
>seq1427
Length=108667
Score = 98.7 bits (108), Expect = 9e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| | || || ||||||||||||||| ||||
Sbjct 17794 GACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCG 17735
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| ||||| ||||| ||||| || ||||||||||| || || || ||| |
Sbjct 17734 AAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACA 17675
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||||| | || || || | || | |||||||| || || |||||
Sbjct 17674 TTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 17615
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 17614 ACGAAGATCTGCAT 17601
>seq2834
Length=64598
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||| | || | | ||||||| || || |||||||||||| | ||
Sbjct 929 ACGAAGGCGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT 870
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||||||||||||||| |||| |||| || || ||||| || || || |||||
Sbjct 869 GCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCC 810
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || || || ||||| | || | || || | | || ||||| |
Sbjct 809 TTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAG 750
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | |||||||| || || ||||| | ||| ||||||||
Sbjct 749 GGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 708
>seq6
Length=1196388
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | ||||| || || ||||| ||||| | |||
Sbjct 29937 ACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGT 29996
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||||||||| | | |||| |||||||| |||||||| || || ||
Sbjct 29997 TCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCC 30056
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||||||||| |||||| |||| | || | ||||| | ||| || || |
Sbjct 30057 TTCTTTATCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAG 30116
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | | || ||||| || ||||| | ||||| |||||
Sbjct 30117 AGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476544486347280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |