Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq220 118 1e-21 seq814 102 9e-17 >seq220 Length=268034 Score = 118 bits (130), Expect = 1e-21 Identities = 162/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 161125 GTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGG 161184 |||| | || ||||| || ||||||| ||| ||||| | || |||||| | ||||| Sbjct 141962 GTACGTGTTGGATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCTTGTAGGGCTGG 142021 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 | ||||| || || || ||||| ||| || ||||| | ||||||||||| || || Sbjct 142022 CTCGTGCTCCTCATGCGCCGGTAAGCTTACGTCTGGTACTCTTGACCAGTCTGATCAATC 142081 Query 161245 CTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 |||||| |||||||||||||||| |||||| || | || |||| ||| || ||| Sbjct 142082 CTTCTTAGATGATGACCAGATTGCTGCTGGATGGGTTCTTACTTGTGCTGCTTACCCTGT 142141 Query 161305 TAGCGATTGTGTGATTCAAACTGAGCAAGAGGAGAATCTGTACTG 161349 ||| ||| | ||| | ||| | | |||||| | || ||||| Sbjct 142142 TAGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCT-TACTG 142185 >seq814 Length=133700 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160653 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 160712 ||||| || || |||||||| |||||| | |||||||| |||||||| ||||||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 160713 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCAC 160768 || |||| | ||||||||| | || || ||||||||||| || || ||||| || Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC 56189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559425683427600