Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq814 98.7 1e-15 seq371 84.2 3e-11 >seq814 Length=133700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 175161 ATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 175220 ||||| || || ||||| || |||||| | |||||||| ||||| ||| ||||||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 175221 TCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACC 175277 || | || | |||||||||||||| || ||||| || || ||||| ||||| ||| Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACC 56188 >seq371 Length=200744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 298/457 (65%), Gaps = 14/457 (3%) Strand=Plus/Minus Query 162349 TTAGAACCAACCAATGACGCATACGCAATCGCAAAGATCGCAGGGATCAAACAATGTGAC 162408 || ||||| |||||||| || || || || || || ||||| ||||| ||||| | Sbjct 7417 TTGGAACCCACCAATGAGTGGTATGCCATTGCTAAAATTGCAGGAATCAAG--ATGTGCC 7360 Query 162409 TTC--TACCGAGAACAATATGGATTTGATGCTATCTCTATCATGCCTCCTAATCTATATG 162466 || ||| ||| || | ||||| | ||| ||||| ||||| |||||| Sbjct 7359 AAGCTTATCGAATTCAACATAATTGGGATGCAGTTTCTGGTATGCCCACTAATTTATATG 7300 Query 162467 GTCCTGGAGATAATTTCAAT---GAGGGATCAGGACATGTCCTCGCCT-CATTGATGAAT 162522 | ||| || |||||| || ||| || ||||| | |||| | ||||| Sbjct 7299 GCCCTAATGACAATTTCCATCCTGAGAATTCC---CATGTTTT-GCCTGCGTTGATTCGG 7244 Query 162523 AGGTTTCACCTAGCGAAGGAAGCAGGTGCATCTAGAGTTGAATGT-TGGGGTGATGGGAC 162581 |||||||| ||||||| |||| || ||| || ||| ||||| |||| | Sbjct 7243 AGGTTTCATGAGGCGAAGGTGAGGGGTG-ATAAGGAGGTGGTTGTGTGGGGAAGTGGGTC 7185 Query 162582 ACCTATGAGGGAGTTCCTATATGTGGATGACTTAGCAGATGCTTCCTTATACTTTATGGA 162641 ||| ||||||||||| | |||| ||||| | || |||||| | | | ||||| Sbjct 7184 TCCTTTGAGGGAGTTCTTGCATGTCGATGATCTTGCTGATGCTGTAGTGTTTATGATGGA 7125 Query 162642 TAGTTATAGTGAGTCTGGGCACATTAATACTGGGACTGGTAGGGATGTAACTATCAAACA 162701 | ||||||| || | ||| | ||| |||| ||| | ||| || | ||| || | Sbjct 7124 CAAGTATAGTGGGTTGAGCCACTTGAATGTCGGGAGTGGCAAGGAGGTGAGTATTAAGGA 7065 Query 162702 ACTAGCGGAGACTATTGCTGATGTAGTTGGATACAAAGGTGAGATAGGTTGGGATACAAC 162761 | || ||| | | || || ||||||| |||| ||| | | |||||||| || Sbjct 7064 GTTGGCTGAGCTTGTGAAGGAGGTGGTTGGATTTGAAGGGGAGCTTGTTTGGGATAAGAC 7005 Query 162762 TAAACCCAACGGAAACCCAAGGAAACTACTTGACAGC 162798 ||| || | |||| ||||||||| || | |||||| Sbjct 7004 TAAGCCTGATGGAACCCCAAGGAAGCTTATGGACAGC 6968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729827428104240