Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq20 194 2e-44
seq63 113 6e-20
>seq20
Length=765589
Score = 194 bits (214), Expect = 2e-44
Identities = 590/902 (65%), Gaps = 21/902 (2%)
Strand=Plus/Minus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || || ||||| | ||||| || |||||||| || |||| | || ||
Sbjct 522463 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 522404
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTA--TAtttttttttAAATCCTAATTCTGAA 39442
||||| |||| ||||| || || | | || |||| | | || | | | |
Sbjct 522403 CTCCATCCAATCGAACGGGTTC--TGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCC 522346
Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502
| || || ||||||||||| || ||||| |||||| ||||| ||||| || |
Sbjct 522345 AACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACC 522286
Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562
|| || || || || || || |||| |||||| ||||| || || || || ||| |
Sbjct 522285 AGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACT 522226
Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCA 39618
||| || |||| ||||| | | | | ||| ||| || | |||
Sbjct 522225 ATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC----AGGCA 522170
Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678
||| || ||||| || || || || |||| || | ||||| || || || | ||
Sbjct 522169 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACC 522110
Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGA 39737
||||||| ||||||||||||||||| || |||| |||| ||| |||||| ||||| |
Sbjct 522109 CGGCATTAACCCACGCTTTTTGAGCCAGAAGATGG-AGCAGAAACTTCCAGAGAAGAAAA 522051
Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCC 39797
| ||||| || ||||| |||| | ||||| | | | | || || ||||
Sbjct 522050 TCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGATTCAGCACCATCAATCC 521991
Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857
| | |||||||| || |||||||| |||||||| || ||||| || ||| ||| |
Sbjct 521990 AACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 521931
Query 39858 GATAATGTTTTTCA--TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915
||| | | || | | | |||||| | || || |||| | ||| ||||||||
Sbjct 521930 GAT--GGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTC 521873
Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975
|| || ||||||||||| || || || || || || ||| | ||||||| || ||
Sbjct 521872 AGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTG 521813
Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035
||||| |||||| | || | ||| || || || || || ||||| ||
Sbjct 521812 AACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAA 521753
Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTC 40092
|| || | | || | || |||| | ||| |||| || || | | |||||
Sbjct 521752 GAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTG 521693
Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152
| | ||||| || | ||| |||||||| || ||||| || || || || || |||||
Sbjct 521692 ACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTT 521633
Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212
|||||| | ||| || | | |||| ||||| || ||| ||||||| ||| ||||
Sbjct 521632 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTC 521573
Query 40213 TG 40214
||
Sbjct 521572 TG 521571
>seq63
Length=488123
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|||||||| || | |||| ||||| | |||| | || | |||||| || | ||| |||
Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | ||||| || ||| ||||||||||| | || || || || | |||
Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || || ||||| || ||| ||| | |||||| |||| || ||||||||
Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || |||||||||||| ||||||| | ||| || ||||||
Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686812649940720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |