Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20 194 2e-44 seq63 113 6e-20 >seq20 Length=765589 Score = 194 bits (214), Expect = 2e-44 Identities = 590/902 (65%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || ||||| | ||||| || |||||||| || |||| | || || Sbjct 522463 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 522404 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTA--TAtttttttttAAATCCTAATTCTGAA 39442 ||||| |||| ||||| || || | | || |||| | | || | | | | Sbjct 522403 CTCCATCCAATCGAACGGGTTC--TGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCC 522346 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | || || ||||||||||| || ||||| |||||| ||||| ||||| || | Sbjct 522345 AACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACC 522286 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || || || || || || || |||| |||||| ||||| || || || || ||| | Sbjct 522285 AGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACT 522226 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCA 39618 ||| || |||| ||||| | | | | ||| ||| || | ||| Sbjct 522225 ATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC----AGGCA 522170 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| || ||||| || || || || |||| || | ||||| || || || | || Sbjct 522169 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACC 522110 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGA 39737 ||||||| ||||||||||||||||| || |||| |||| ||| |||||| ||||| | Sbjct 522109 CGGCATTAACCCACGCTTTTTGAGCCAGAAGATGG-AGCAGAAACTTCCAGAGAAGAAAA 522051 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCC 39797 | ||||| || ||||| |||| | ||||| | | | | || || |||| Sbjct 522050 TCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGATTCAGCACCATCAATCC 521991 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | |||||||| || |||||||| |||||||| || ||||| || ||| ||| | Sbjct 521990 AACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 521931 Query 39858 GATAATGTTTTTCA--TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | | || | | | |||||| | || || |||| | ||| |||||||| Sbjct 521930 GAT--GGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTC 521873 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || || ||||||||||| || || || || || || ||| | ||||||| || || Sbjct 521872 AGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTG 521813 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||||| |||||| | || | ||| || || || || || ||||| || Sbjct 521812 AACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAA 521753 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTC 40092 || || | | || | || |||| | ||| |||| || || | | ||||| Sbjct 521752 GAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTG 521693 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | | ||||| || | ||| |||||||| || ||||| || || || || || ||||| Sbjct 521692 ACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTT 521633 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 |||||| | ||| || | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 521632 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTC 521573 Query 40213 TG 40214 || Sbjct 521572 TG 521571 >seq63 Length=488123 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 |||||||| || | |||| ||||| | |||| | || | |||||| || | ||| ||| Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| || ||| ||||||||||| | || || || || | ||| Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| |||| || |||||||| Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||||| | ||| || |||||| Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686812649940720