Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20 152 4e-32 >seq20 Length=765589 Score = 152 bits (168), Expect = 4e-32 Identities = 411/616 (67%), Gaps = 11/616 (2%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTT-TGTCGTGTTTCCAATTCAATATCATGACATATGGCA 43737 || |||||||| || ||| || ||| |||| |||||| |||| | | || ||| | Sbjct 521567 CTCACAGAAAACCCAGATAGATTCTGTA-TGTTCCCAATTGAATACCCACAAATCTGGGA 521625 Query 43738 AATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA 43797 ||||||||||||||| | || ||||| ||||| || |||||||| ||| | | |||| Sbjct 521626 AATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGA 521685 Query 43798 C-TTAG-CACATTGGATTGCATTAAAACCAC--AAGAAAAACATTTTATATCTTTGGTTT 43853 || | ||| | ||| ||| |||||| | ||| | ||||| || | | Sbjct 521686 TGTTCGTCAC-TGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCC 521744 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || || || || ||||| || || || ||| | | | | || | Sbjct 521745 TCGCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGA 521804 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | || ||||| | | ||||| || ||| ||||| || ||||| ||||| ||||| | Sbjct 521805 AGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACA 521864 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || ||||||||| |||||| |||| || |||||||||||| || ||| Sbjct 521865 TTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGATTCTAACCTTAAG- 521923 Query 44034 ATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | | || | ||| ||| || ||||| | ||| |||| | || ||||| ||||| Sbjct 521924 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCT 521983 Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||| ||||| || ||| || |||| || | | | || ||||| ||| Sbjct 521984 CTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTT 522043 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||| |||||||| || ||| || ||| |||| || ||| | || || || || || Sbjct 522044 GAAGGGATTTTCTTCTCTGGAAGTTTCTGC-TCCATCTTCTGGCTCAAAAAGCGTGGGTT 522102 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||| || || || || ||||| ||| | ||| || || ||||| | || || || Sbjct 522103 AATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGA 522162 Query 44272 TTTTGCTTGCTTGTTA 44287 |||||| ||| || || Sbjct 522163 TTTTGCCTGCCTGCTA 522178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397401756943990