Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq20 152 4e-32
>seq20
Length=765589
Score = 152 bits (168), Expect = 4e-32
Identities = 411/616 (67%), Gaps = 11/616 (2%)
Strand=Plus/Plus
Query 43679 CTTACAGAAAATCCGTCTAGGTT-TGTCGTGTTTCCAATTCAATATCATGACATATGGCA 43737
|| |||||||| || ||| || ||| |||| |||||| |||| | | || ||| |
Sbjct 521567 CTCACAGAAAACCCAGATAGATTCTGTA-TGTTCCCAATTGAATACCCACAAATCTGGGA 521625
Query 43738 AATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA 43797
||||||||||||||| | || ||||| ||||| || |||||||| ||| | | ||||
Sbjct 521626 AATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGA 521685
Query 43798 C-TTAG-CACATTGGATTGCATTAAAACCAC--AAGAAAAACATTTTATATCTTTGGTTT 43853
|| | ||| | ||| ||| |||||| | ||| | ||||| || | |
Sbjct 521686 TGTTCGTCAC-TGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCC 521744
Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913
| || || || || || ||||| || || || ||| | | | | || |
Sbjct 521745 TCGCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGA 521804
Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973
| || ||||| | | ||||| || ||| ||||| || ||||| ||||| ||||| |
Sbjct 521805 AGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACA 521864
Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033
|||| || ||||||||| |||||| |||| || |||||||||||| || |||
Sbjct 521865 TTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGATTCTAACCTTAAG- 521923
Query 44034 ATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092
| | || | ||| ||| || ||||| | ||| |||| | || ||||| |||||
Sbjct 521924 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCT 521983
Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152
||| ||||| || ||| || |||| || | | | || ||||| |||
Sbjct 521984 CTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTT 522043
Query 44153 GAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211
||||| |||||||| || ||| || ||| |||| || ||| | || || || || ||
Sbjct 522044 GAAGGGATTTTCTTCTCTGGAAGTTTCTGC-TCCATCTTCTGGCTCAAAAAGCGTGGGTT 522102
Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271
||||| || || || || ||||| ||| | ||| || || ||||| | || || ||
Sbjct 522103 AATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGA 522162
Query 44272 TTTTGCTTGCTTGTTA 44287
|||||| ||| || ||
Sbjct 522163 TTTTGCCTGCCTGCTA 522178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397401756943990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |