Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2834 125 6e-24 seq1427 116 3e-21 seq1360 107 2e-18 seq51 93.3 4e-14 seq6 89.7 4e-13 >seq2834 Length=64598 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| | |||||||||||||| || Sbjct 904 GTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 846 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| || ||||| || || || | || ||||| || ||||||| ||| Sbjct 845 GGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTT 786 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || ||| |||||||| ||||| | ||| ||||| || || Sbjct 785 CACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 726 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 725 TTTCACGAAGATCTGCAT 708 >seq1427 Length=108667 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| | |||||||||||||| || Sbjct 17797 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 17739 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| ||||| || || || | || ||||| || ||||||| ||| Sbjct 17738 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 17679 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | || ||| || ||||| ||||| | ||| ||||| || || Sbjct 17678 GACATTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGT 17619 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 17618 TTTCACGAAGATCTGCAT 17601 >seq1360 Length=99280 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | || |||||||||||||||| ||| Sbjct 35120 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCG 35179 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | || || || || |||||| | ||| Sbjct 35180 GCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTC 35239 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || |||||| ||||| ||||| | ||| || || || ||| Sbjct 35240 ACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 35299 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 35300 TTCACGAATATCTGCAT 35316 >seq51 Length=574565 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || |||||||| ||| ||| || | || || | ||| ||||| Sbjct 463679 GTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGC-CATCATCCAACTGCTTACC 463621 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || ||||| || | |||||| ||||| || ||| | || Sbjct 463620 AGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTGGTCTT 463561 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || || || || || || | ||||| ||||| || Sbjct 463560 GACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 463501 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||||||||| Sbjct 463500 TTTCACAAAGATTTGCAT 463483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | |||||| | |||| || || ||||| || || ||||||||||| || || Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | | | || || | ||| || ||||| | || || | ||| || || || || Sbjct 464105 AATG-TCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 464047 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| | || | | | || | |||||| | | |||||| Sbjct 464046 AATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAAC 463987 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||| || || || | ||| || || ||||| ||||| || || |||||| || Sbjct 463986 TTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATACCT 463935 >seq6 Length=1196388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||||||||||||| || | |||| | || ||||| || || || Sbjct 28366 GTGGATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCT 28425 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || ||||| || | ||||| ||||| ||| || ||||| Sbjct 28426 GCAAAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTC 28485 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || ||||| |||| | ||||| || || || || | || || |||| ||| Sbjct 28486 ACATTATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTC 28545 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 28546 TTGACAAAAATCTGCAT 28562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || || ||||| | | | || | || ||| Sbjct 29950 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCG 30009 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | || |||||||| ||||| || || | || |||||||| Sbjct 30010 AGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTATCTTGA 30069 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| | |||| | || | || || | || || || |||||||| || ||| Sbjct 30070 ATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATGGACTTG 30129 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| ||||| |||||||| Sbjct 30130 CCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424876406812176