Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2834 125 6e-24
seq1427 116 3e-21
seq1360 107 2e-18
seq51 93.3 4e-14
seq6 89.7 4e-13
>seq2834
Length=64598
Score = 125 bits (138), Expect = 6e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || || || || || ||||||||| || | || ||| | |||||||||||||| ||
Sbjct 904 GTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 846
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | ||||| || ||||| || || || | || ||||| || ||||||| |||
Sbjct 845 GGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTT 786
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
|| | || | ||||| | || ||| |||||||| ||||| | ||| ||||| || ||
Sbjct 785 CACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 726
Query 27230 TTTCACAAAGATTTGCAT 27247
|||||| ||||| |||||
Sbjct 725 TTTCACGAAGATCTGCAT 708
>seq1427
Length=108667
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || || || || || ||||||||| || | || ||| | |||||||||||||| ||
Sbjct 17797 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 17739
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | |||||||| ||||| || || || | || ||||| || ||||||| |||
Sbjct 17738 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 17679
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | || || | || ||| || ||||| ||||| | ||| ||||| || ||
Sbjct 17678 GACATTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGT 17619
Query 27230 TTTCACAAAGATTTGCAT 27247
|||||| ||||| |||||
Sbjct 17618 TTTCACGAAGATCTGCAT 17601
>seq1360
Length=99280
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | | || |||||||||||||||| |||
Sbjct 35120 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCG 35179
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || |||||||| || || || || | || || || || |||||| | |||
Sbjct 35180 GCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTC 35239
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| || |||||| ||||| ||||| | ||| || || || |||
Sbjct 35240 ACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 35299
Query 27231 TTCACAAAGATTTGCAT 27247
||||| || || |||||
Sbjct 35300 TTCACGAATATCTGCAT 35316
>seq51
Length=574565
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || || ||||| || |||||||| ||| ||| || | || || | ||| |||||
Sbjct 463679 GTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGC-CATCATCCAACTGCTTACC 463621
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
||| | ||||| | ||| || ||||| || | |||||| ||||| || ||| | ||
Sbjct 463620 AGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTGGTCTT 463561
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | |||||| | | || || || || || || | ||||| ||||| ||
Sbjct 463560 GACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 463501
Query 27230 TTTCACAAAGATTTGCAT 27247
||||||||||||||||||
Sbjct 463500 TTTCACAAAGATTTGCAT 463483
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
||||| | |||||| | |||| || || ||||| || || ||||||||||| || ||
Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
||| | | | || || | ||| || ||||| | || || | ||| || || || ||
Sbjct 464105 AATG-TCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 464047
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||| | || | | | || | |||||| | | ||||||
Sbjct 464046 AATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAAC 463987
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251
||| || || || | ||| || || ||||| ||||| || || |||||| ||
Sbjct 463986 TTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATACCT 463935
>seq6
Length=1196388
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| |||||||||||||| || | |||| | || ||||| || || ||
Sbjct 28366 GTGGATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCT 28425
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| || ||||| || | ||||| ||||| ||| || |||||
Sbjct 28426 GCAAAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTC 28485
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || ||||| |||| | ||||| || || || || | || || |||| |||
Sbjct 28486 ACATTATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTC 28545
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| || |||||
Sbjct 28546 TTGACAAAAATCTGCAT 28562
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| || || || || || ||||| | | | || | || |||
Sbjct 29950 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCG 30009
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||||||||| || | || |||||||| ||||| || || | || ||||||||
Sbjct 30010 AGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTATCTTGA 30069
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| ||| | |||| | || | || || | || || || |||||||| || |||
Sbjct 30070 ATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATGGACTTG 30129
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || ||||| ||||| ||||||||
Sbjct 30130 CCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424876406812176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |