Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1046 118 1e-21 seq63 104 3e-17 seq370 96.9 4e-15 >seq1046 Length=115582 Score = 118 bits (130), Expect = 1e-21 Identities = 278/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| ||| | || ||||| | | |||||| Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 62636 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| ||||| || ||||||||| || | Sbjct 62635 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 62576 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | |||| | || || |||||||| ||||||| || ||||| || || Sbjct 62575 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 62516 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 62515 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 62456 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || || || | || |||| | || || || || ||| | ||| || || | Sbjct 62455 ATTTCAACGAACTCTGACCCAGA--AATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 62398 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || || || || |||||||| || |||||| ||| | || ||| | || | Sbjct 62397 TAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACCCTTAG 62338 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 |||| ||| ||| || | | || || |||| || || || ||||| | ||| Sbjct 62337 GGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGGAATTCCACTACCTC 62280 >seq63 Length=488123 Score = 104 bits (114), Expect = 3e-17 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || ||||||||||| ||||| | ||||| ||||| | |||| Sbjct 277117 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCGTGGGTGAACCACCTTTGG 277176 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || ||| |||| | | | || || || || ||| |||||| || | || Sbjct 277177 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 277236 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 112119 |||| ||| | ||||| ||| || | |||| | | || | || || | | ||||| Sbjct 277237 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 277295 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || |||| |||||||||| ||||||| || || | ||| |||||| Sbjct 277296 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 277342 >seq370 Length=202669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || || || || |||||||||||| | Sbjct 164695 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGCTCCCTCTCATCATTTCC--A 164638 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || |||||||| |||||||| || ||||| Sbjct 164637 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAATAAACACAATG 164578 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | | || | ||||| | ||| | ||||| || |||||||| Sbjct 164577 CAAGG-CGCTTTACTCTTCGCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCACACC 164519 Query 11716 AACAAACATCTCCACAAA 11733 |||||||| ||||||||| Sbjct 164518 AACAAACAGCTCCACAAA 164501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627944091220800