Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1046 89.7 6e-13 >seq1046 Length=115582 Score = 89.7 bits (98), Expect = 6e-13 Identities = 297/451 (66%), Gaps = 22/451 (5%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| ||||| | | | ||| |||||| || || | ||| || || || Sbjct 62725 TCAAAGCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCAGCA 62666 Query 14126 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 | |||| ||| || || |||| |||||||||||||||||||| | || ||||| Sbjct 62665 ACAACAATGATACCAGT---GTTACCCTCAAAGCCATCCATCTCAGTTAGAAGCTGATTC 62609 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCACTGCGTTGCTTACCG 14239 | || ||||| | ||||||||| | | || ||| | || | |||| | || Sbjct 62608 AATGTCTGTTCCCTTTCATCATTTCCTCCCCCGATTCCA---GTACCTCTTTGCCTTCCT 62552 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGCAACTTCAAA 14298 || || ||||||||||| | || || || || || |||||| | | ||| ||| Sbjct 62551 ACTGCATCAATTTCATCAACAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAA 62492 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 | ||| ||||||| || || ||||| |||||||| || || || | | | || Sbjct 62491 -AGATCGCGCACTCGAGATGCTCCCACACCAACAAACATTTCAACGAACTCTGACCCAGA 62433 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | || || || || || ||| || || || || || || || ||||| | Sbjct 62432 A-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTC 62374 Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAG 14476 | |||||||| || | || ||| |||| ||||| | ||| || || || || Sbjct 62373 CTGTCCCTGGCGGACCAACAAGCAGGACACCCTTAGGGATGCGGGCTCCAACAGC---AG 62317 Query 14477 T--AGCGTTCAGGTTGTTTAAGGAAGTCCAC 14505 | | | |||||||| ||| ||||| ||||| Sbjct 62316 TAAACCTTTCAGGTTTTTTCAGGAATTCCAC 62286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618348634532880