Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1046 116 4e-21
seq370 100 3e-16
seq20 98.7 1e-15
seq63 89.7 6e-13
seq1283 82.4 9e-11
>seq1046
Length=115582
Score = 116 bits (128), Expect = 4e-21
Identities = 242/355 (68%), Gaps = 4/355 (1%)
Strand=Plus/Minus
Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616
||||| || || | | || || || || | |||| ||||| || | | |||||
Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 62636
Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676
||||||||||| || | ||| || || | || ||||||| ||||||||| || |
Sbjct 62635 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 62576
Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736
|||| || | |||| |||| || |||||||| ||||||| || || ||||| ||
Sbjct 62575 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 62516
Query 9737 TGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795
|||||| | | ||| ||| ||||| || || || || ||||||||||||||
Sbjct 62515 GCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAACAAA 62457
Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854
||| || || || | || | ||| || | || || || ||| || ||| || ||||
Sbjct 62456 CATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 62398
Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909
| || || || |||||||| || || |||||| ||| | || ||| ||||
Sbjct 62397 TAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACC 62343
>seq370
Length=202669
Score = 100 bits (110), Expect = 3e-16
Identities = 308/467 (66%), Gaps = 16/467 (3%)
Strand=Plus/Minus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
||||||||| | ||||| | || | || |||||| | |||| | ||| || ||
Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726
Query 9583 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640
|| | |||| | |||| || | | | ||| ||||||||||| ||||| | ||
Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668
Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9698
|| ||||| || |||| |||||||| | | | ||| || || | | |||| | |
Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610
Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 9756
| || |||||||| |||||||| || || ||||| || | ||| | | || || ||
Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 164552
Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814
||| | ||||| ||| || | || |||||||||||||||| ||||||||| | |
Sbjct 164551 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 164494
Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874
|| | ||| | ||| || ||| | ||||| || | || | || | | |||
Sbjct 164493 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 164434
Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 9934
|| || || || || ||| | ||||| ||| ||| || || || || | ||
Sbjct 164433 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 164374
Query 9935 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTC 9981
||| | ||||| | ||| | ||| ||||||| ||| | ||||||
Sbjct 164373 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327
>seq20
Length=765589
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789
|||| | || ||| || | ||||| || ||||||||| | ||| ||||| ||
Sbjct 521946 AAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATG----GT 522001
Query 94790 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
| || ||||||||| | | | || ||||| |||||||| || || |||||||||
Sbjct 522002 GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 522061
Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908
|| |||||| | || | |||||||| ||||| || | ||||| ||| | ||||
Sbjct 522062 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTC 522121
Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|| |||||||| || || || ||||| || || ||| || |||||
Sbjct 522122 TCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168
>seq63
Length=488123
Score = 89.7 bits (98), Expect = 6e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-AC 104195
|| |||| |||| || || |||||| |||||||||| |||| || | ||||| | |
Sbjct 277343 AGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAA 277285
Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255
|| || | || ||| |||| | || ||| ||||| | ||| | || || | || |
Sbjct 277284 GGTTCAAGGGACGGTTG-TGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGA 277226
Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315
| || ||| || || || || | | | |||| ||| || |||||||||| | ||
Sbjct 277225 TCCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGT 277166
Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
||| ||||| | ||||| ||||||||||| || |||||||| || |||
Sbjct 277165 TCACCCACGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCAA 277116
>seq1283
Length=103335
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGAT--TTTCGCGAGCGACTTCAAAGA 9761
||||||||||||||||| || | ||| || ||| || |||| |||| || |||| |
Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTT-AGCGGCTGCAAACA 48367
Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9819
|||| | || | | |||| || |||||||||||||||||| |||| | ||| | |
Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426
Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| || ||| || || || ||| || ||||| |||| ||| || | ||| || ||
Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485
Query 9880 CGTACCTGG 9888
||||| ||
Sbjct 48486 AGTACCAGG 48494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583179158069520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |