Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1046 116 4e-21 seq370 100 3e-16 seq20 98.7 1e-15 seq63 89.7 6e-13 seq1283 82.4 9e-11 >seq1046 Length=115582 Score = 116 bits (128), Expect = 4e-21 Identities = 242/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 62695 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 62636 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 62635 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 62576 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| || | |||| |||| || |||||||| ||||||| || || ||||| || Sbjct 62575 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 62516 Query 9737 TGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 |||||| | | ||| ||| ||||| || || || || |||||||||||||| Sbjct 62515 GCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAACAAA 62457 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || || || | || | ||| || | || || || ||| || ||| || |||| Sbjct 62456 CATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 62398 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | || || || |||||||| || || |||||| ||| | || ||| |||| Sbjct 62397 TAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGACCAACAAGCAGGACACC 62343 >seq370 Length=202669 Score = 100 bits (110), Expect = 3e-16 Identities = 308/467 (66%), Gaps = 16/467 (3%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 164785 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 164726 Query 9583 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || | |||| | |||| || | | | ||| ||||||||||| ||||| | || Sbjct 164725 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 164668 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9698 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 164667 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 164610 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 9756 | || |||||||| |||||||| || || ||||| || | ||| | | || || || Sbjct 164609 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 164552 Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||| | ||||| ||| || | || |||||||||||||||| ||||||||| | | Sbjct 164551 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 164494 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | ||| | ||| || ||| | ||||| || | || | || | | ||| Sbjct 164493 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 164434 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 9934 || || || || || ||| | ||||| ||| ||| || || || || | || Sbjct 164433 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 164374 Query 9935 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTC 9981 ||| | ||||| | ||| | ||| ||||||| ||| | |||||| Sbjct 164373 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTC 164327 >seq20 Length=765589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789 |||| | || ||| || | ||||| || ||||||||| | ||| ||||| || Sbjct 521946 AAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATG----GT 522001 Query 94790 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 | || ||||||||| | | | || ||||| |||||||| || || ||||||||| Sbjct 522002 GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 522061 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || |||||| | || | |||||||| ||||| || | ||||| ||| | |||| Sbjct 522062 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTC 522121 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || |||||||| || || || ||||| || || ||| || ||||| Sbjct 522122 TCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168 >seq63 Length=488123 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-AC 104195 || |||| |||| || || |||||| |||||||||| |||| || | ||||| | | Sbjct 277343 AGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAA 277285 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | || ||| |||| | || ||| ||||| | ||| | || || | || | Sbjct 277284 GGTTCAAGGGACGGTTG-TGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGA 277226 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 | || ||| || || || || | | | |||| ||| || |||||||||| | || Sbjct 277225 TCCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGT 277166 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| ||||| | ||||| ||||||||||| || |||||||| || ||| Sbjct 277165 TCACCCACGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCAA 277116 >seq1283 Length=103335 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGAT--TTTCGCGAGCGACTTCAAAGA 9761 ||||||||||||||||| || | ||| || ||| || |||| |||| || |||| | Sbjct 48310 GCATCAATCTCATCAATAAAAATGATACAAGGT-GACCGTTTCTT-AGCGGCTGCAAACA 48367 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9819 |||| | || | | |||| || |||||||||||||||||| |||| | ||| | | Sbjct 48368 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 48426 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || || ||| || || || ||| || ||||| |||| ||| || | ||| || || Sbjct 48427 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 48485 Query 9880 CGTACCTGG 9888 ||||| || Sbjct 48486 AGTACCAGG 48494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583179158069520