Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq20 140 4e-28 >seq20 Length=765589 Score = 140 bits (154), Expect = 4e-28 Identities = 358/537 (67%), Gaps = 16/537 (3%) Strand=Plus/Plus Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||| || ||||| || || || ||| ||||| | || ||||| ||||| | | Sbjct 521929 TCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCG 521988 Query 59951 GTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGG 60010 ||||| | || | ||| ||||| | | | || |||||||| || || ||||| Sbjct 521989 TTGGATTGATGGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGG 522048 Query 60011 AATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCC 60070 || ||||||||||| ||||| | || |||||||||||||||||||| | ||||| Sbjct 522049 GATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCC 522108 Query 60071 GGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| | | ||||| ||||||||||| || || ||||| || || || || ||||| Sbjct 522109 GGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168 Query 60131 AGTGACGCTCTATTCACACCTATTGGA-AAAATGC--CCTTCCAAGGATATTCACAAGAT 60187 || | |||| || | || || | || | || | || | | || ||| Sbjct 522169 -CTG-CCTGCTATACA-GCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGAT 522225 Query 60188 TGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACT 60247 || || || ||| | ||| | |||||| | || || |||||||| || || Sbjct 522226 AGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCT 522285 Query 60248 CATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCAT 60307 | || ||| || || |||| ||||||||| ||||||| || ||| | || | Sbjct 522286 GGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGACAGGCTGTT 522345 Query 60308 GGC-CCAGTTTG----GAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362 ||| || || | || |||| ||||||| || | ||||| ||||| |||||| Sbjct 522346 GGCTGCACTTGGGTGTGAAAAGG-----TTTACGGAGTTCAGAACCCGTTCGATTGGATG 522400 Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||| ||||| | |||||||||| || |||||||||||| | || ||||| ||| Sbjct 522401 GAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTAT 522457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548448020241120