Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq20 140 4e-28
>seq20
Length=765589
Score = 140 bits (154), Expect = 4e-28
Identities = 358/537 (67%), Gaps = 16/537 (3%)
Strand=Plus/Plus
Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950
||| || ||||| || || || ||| ||||| | || ||||| ||||| | |
Sbjct 521929 TCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCG 521988
Query 59951 GTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGG 60010
||||| | || | ||| ||||| | | | || |||||||| || || |||||
Sbjct 521989 TTGGATTGATGGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGG 522048
Query 60011 AATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCC 60070
|| ||||||||||| ||||| | || |||||||||||||||||||| | |||||
Sbjct 522049 GATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTAATGCC 522108
Query 60071 GGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130
||| | | ||||| ||||||||||| || || ||||| || || || || |||||
Sbjct 522109 GGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 522168
Query 60131 AGTGACGCTCTATTCACACCTATTGGA-AAAATGC--CCTTCCAAGGATATTCACAAGAT 60187
|| | |||| || | || || | || | || | || | | || |||
Sbjct 522169 -CTG-CCTGCTATACA-GCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGAT 522225
Query 60188 TGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACT 60247
|| || || ||| | ||| | |||||| | || || |||||||| || ||
Sbjct 522226 AGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCT 522285
Query 60248 CATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCAT 60307
| || ||| || || |||| ||||||||| ||||||| || ||| | || |
Sbjct 522286 GGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGACAGGCTGTT 522345
Query 60308 GGC-CCAGTTTG----GAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362
||| || || | || |||| ||||||| || | ||||| ||||| ||||||
Sbjct 522346 GGCTGCACTTGGGTGTGAAAAGG-----TTTACGGAGTTCAGAACCCGTTCGATTGGATG 522400
Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419
||| ||||| | |||||||||| || |||||||||||| | || ||||| |||
Sbjct 522401 GAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTAT 522457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548448020241120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |