Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16 84.2 2e-11 seq89 82.4 8e-11 seq14 82.4 8e-11 >seq16 Length=876803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 762463 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 762404 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 762403 AACTGAGCTACGAGAGCA 762386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 771245 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 771186 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 771185 AACTGAGCTACGAGAGCA 771168 >seq89 Length=411077 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 11/105 (10%) Strand=Plus/Plus Query 79706 AACTCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATCCGGATTAGAG 79765 || || |||||| ||||||||||||| ||||||||||||| ||||| || | | | Sbjct 122007 AAATCCGACCTGCCGGAATCGAACCAGCGACCTAAAGATGCCTGAA-----GGCTAATAA 122061 Query 79766 CACACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810 | || |||||||||| |||||| |||| |||||||||||| Sbjct 122062 CCCA------CTACAGTCTTCCGCTCTGCCAACTGAGCTAAGGTC 122100 >seq14 Length=1067875 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 117349 ACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTT 117408 |||||| ||||| |||||| ||| || || || | ||| |||| || || || || Sbjct 1010311 ACGCGTTCCGAACTGTCCATGGGGCATTAAAAGATTGATGTTATTGGATCCAACGAAATT 1010252 Query 117409 TTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTG 117468 || |||| | ||||| || | ||| | |||||||||||||| ||||| | | | Sbjct 1010251 CTGTGCCATGCCCACAATTGTGCTTTGTATACTCGCCTCACCATGATGATAAGATGATTT 1010192 Query 117469 CTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTT- 117525 ||| | ||||| || | |||||| || || || ||||| ||| ||| ||||| Sbjct 1010191 CTCAGATACGTAACCACTGAACTGAGCAACTTT--TGCCTGACTGATCAAGTTTTTCTTA 1010134 Query 117526 GAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | ||| ||| ||| || || | ||| |||||||||| ||||| Sbjct 1010133 AATGCA-GCAAAAAGGACTTTCCTCTGTGTTGGCTTCAGCCCATC 1010090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547139403440400