Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq16 84.2 2e-11
seq89 82.4 8e-11
seq14 82.4 8e-11
>seq16
Length=876803
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct 762463 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 762404
Query 79681 AATTGAGCTACGAAAGCA 79698
|| |||||||||| ||||
Sbjct 762403 AACTGAGCTACGAGAGCA 762386
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
|| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct 771245 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 771186
Query 79681 AATTGAGCTACGAAAGCA 79698
|| |||||||||| ||||
Sbjct 771185 AACTGAGCTACGAGAGCA 771168
>seq89
Length=411077
Score = 82.4 bits (90), Expect = 8e-11
Identities = 81/105 (77%), Gaps = 11/105 (10%)
Strand=Plus/Plus
Query 79706 AACTCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATCCGGATTAGAG 79765
|| || |||||| ||||||||||||| ||||||||||||| ||||| || | | |
Sbjct 122007 AAATCCGACCTGCCGGAATCGAACCAGCGACCTAAAGATGCCTGAA-----GGCTAATAA 122061
Query 79766 CACACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810
| || |||||||||| |||||| |||| ||||||||||||
Sbjct 122062 CCCA------CTACAGTCTTCCGCTCTGCCAACTGAGCTAAGGTC 122100
>seq14
Length=1067875
Score = 82.4 bits (90), Expect = 8e-11
Identities = 156/225 (69%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 117349 ACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTT 117408
|||||| ||||| |||||| ||| || || || | ||| |||| || || || ||
Sbjct 1010311 ACGCGTTCCGAACTGTCCATGGGGCATTAAAAGATTGATGTTATTGGATCCAACGAAATT 1010252
Query 117409 TTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTG 117468
|| |||| | ||||| || | ||| | |||||||||||||| ||||| | | |
Sbjct 1010251 CTGTGCCATGCCCACAATTGTGCTTTGTATACTCGCCTCACCATGATGATAAGATGATTT 1010192
Query 117469 CTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTT- 117525
||| | ||||| || | |||||| || || || ||||| ||| ||| |||||
Sbjct 1010191 CTCAGATACGTAACCACTGAACTGAGCAACTTT--TGCCTGACTGATCAAGTTTTTCTTA 1010134
Query 117526 GAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| ||| ||| ||| || || | ||| |||||||||| |||||
Sbjct 1010133 AATGCA-GCAAAAAGGACTTTCCTCTGTGTTGGCTTCAGCCCATC 1010090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547139403440400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |