Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq2871 197 2e-45 seq1363 176 6e-39 seq2629 111 2e-19 seq200 111 2e-19 seq2615 91.5 2e-13 seq814 84.2 3e-11 >seq2871 Length=56367 Score = 197 bits (218), Expect = 2e-45 Identities = 193/246 (78%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | |||||||| |||||||| || || || || || |||||||| || Sbjct 13899 AATGTCACATTCAGTTAAAATTTATGATACATGTATAGGGTGTACTCAATGTGTCCGAGC 13840 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 |||||| |||||||||||||||| | ||||||||||| || ||||| || ||||| || Sbjct 13839 TTGTCCCACGGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCGAAACAAATAGC 13780 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 |||| | || ||||| || |||||||| || ||||||||||||||| | || ||||| || Sbjct 13779 TTCCGCTCCAAGAACAGAAGATTGTGTCGGTTGTAAGAGATGTGAATCTGCTTGTCCAAC 13720 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723 || |||||||| |||| ||||| | | ||| |||||||| | || |||||||||| Sbjct 13719 GGATTTTTTAAGCGTTCGAGTTTATCTATG-GCATGAAACCACTCGCAGTATGGGTCTAG 13661 Query 182724 CATATT 182729 |||| Sbjct 13660 GTTATT 13655 >seq1363 Length=100527 Score = 176 bits (194), Expect = 6e-39 Identities = 196/262 (75%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566 || ||||||| || | || || || ||||||||||||||||| | || |||||||| | Sbjct 26101 TAACAATAGGGCCGGGAGACTTTTTGGTTCATCATGCTATTGCTTTAGGTTTACATACGA 26042 Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATA 186626 | || || ||| |||| || ||||| |||||||| | |||||||| | || ||||||| Sbjct 26041 CTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCAAAGTTAATGCCAGATA 25982 Query 186627 AGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATA 186686 | || ||||| || ||| || ||||| ||||||||||| |||| ||||||||||||| Sbjct 25981 AAAAGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCAGGACGAGGCGGTACTTGTGATA 25922 Query 186687 GTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGG 186746 ||| | |||| | || ||| | |||| |||||| || ||||| || | |||| Sbjct 25921 TTTCGGCTTGGTACTTATTTTATTTGGCTGTTTTCTGGATGTTAAATACCATTGGGTGGG 25862 Query 186747 CAGATTTTTATTGGCACTGGAA 186768 ||||||||||| ||||| Sbjct 25861 TTACCTTTTATTGGCATTGGAA 25840 >seq2629 Length=60788 Score = 111 bits (122), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 182500 TAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGATGT 182559 |||||| |||||||| | || || || || |||||||| |||||||| |||| Sbjct 45966 TAAAATTTATGATACATTTATAGGGTGTACTCAATGTGTCCGAGCTTGTCCCACACATGT 46025 Query 182560 ATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAAC 182619 |||||||||| | ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 46026 ATTAGAAATGATACCTTGGGATGGATGTAAAGCGAAACAAATAGCTTCTGCTCCAAGAAC 46085 Query 182620 TGAGGATT-GTGTAGGATGTAAGAGATGTGAAACAGCATGT 182659 | |||| |||| | |||||||||||| || | || ||| Sbjct 46086 AAAAGATTGGTGTCAGTTGTAAGAGATGTAAATCTGCTTGT 46126 >seq200 Length=274971 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 186818 ACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACA 186877 || ||| | ||||| ||||| ||||||||||| ||| || | | | | |||| Sbjct 230270 ACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAAT 230211 Query 186878 GGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGT 186937 || || | |||||||||||||||| | | || || ||||| ||||||||||| ||||| Sbjct 230210 GGATATAATCCATTTGGTATGAATAGTTTATCGGTTTGGGCGTGGATGTTCTTATTTGGA 230151 Query 186938 CATTTAGTTTGGGCAACAGGATTTATGTTCCTTATT 186973 ||| | |||||||| || |||||||||||| | ||| Sbjct 230150 CATCTTGTTTGGGCTACGGGATTTATGTTCTTAATT 230115 >seq2615 Length=61679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 136389 GGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGGAAAAGATTGGCTAGTATTGGA 136448 || || ||||| |||||||||||| |||||||| ||||| ||||| |||||| Sbjct 39807 GGTATCCTTGCCATTGATGAATCTAATGCAACTTGTGGAAAAAGGTTGGCGTCTATTGGC 39748 Query 136449 GTAGAAAATACAGAGGCAAATAGACAGGCATACAGAGGTATGTTAT--TTACCACAGAGG 136506 |||| || ||||| || ||| | ||||||||| ||| | || | |||| || | Sbjct 39747 TTAGATAACACAGAAGCTAATCGCCAGGCATAC--AGGCAGCTTCTCCTTACGACGCCTG 39690 Query 136507 GATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAAACACT 136552 | ||||| | |||||| |||| | ||| ||||||| |||||||| Sbjct 39689 GGCTAGGTGAATATATTTCTGGTTCCATCCTATTTGAGGAAACACT 39644 >seq814 Length=133700 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 190358 ATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAAC 190417 || ||||||||||||||||| || ||| || | ||||| || |||||| ||||||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 190418 TCAAGAAGTTTACACTTCTTCTTAGCAGTATTCCCTGTA 190456 || | |||||||||||||||||| | | |||||| Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTA 56206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631338815977680