Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq2871 197 2e-45
seq1363 176 6e-39
seq2629 111 2e-19
seq200 111 2e-19
seq2615 91.5 2e-13
seq814 84.2 3e-11
>seq2871
Length=56367
Score = 197 bits (218), Expect = 2e-45
Identities = 193/246 (78%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544
|||||| || | |||||||| |||||||| || || || || || |||||||| ||
Sbjct 13899 AATGTCACATTCAGTTAAAATTTATGATACATGTATAGGGTGTACTCAATGTGTCCGAGC 13840
Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604
|||||| |||||||||||||||| | ||||||||||| || ||||| || ||||| ||
Sbjct 13839 TTGTCCCACGGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCGAAACAAATAGC 13780
Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664
|||| | || ||||| || |||||||| || ||||||||||||||| | || ||||| ||
Sbjct 13779 TTCCGCTCCAAGAACAGAAGATTGTGTCGGTTGTAAGAGATGTGAATCTGCTTGTCCAAC 13720
Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723
|| |||||||| |||| ||||| | | ||| |||||||| | || ||||||||||
Sbjct 13719 GGATTTTTTAAGCGTTCGAGTTTATCTATG-GCATGAAACCACTCGCAGTATGGGTCTAG 13661
Query 182724 CATATT 182729
||||
Sbjct 13660 GTTATT 13655
>seq1363
Length=100527
Score = 176 bits (194), Expect = 6e-39
Identities = 196/262 (75%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566
|| ||||||| || | || || || ||||||||||||||||| | || |||||||| |
Sbjct 26101 TAACAATAGGGCCGGGAGACTTTTTGGTTCATCATGCTATTGCTTTAGGTTTACATACGA 26042
Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATA 186626
| || || ||| |||| || ||||| |||||||| | |||||||| | || |||||||
Sbjct 26041 CTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCAAAGTTAATGCCAGATA 25982
Query 186627 AGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATA 186686
| || ||||| || ||| || ||||| ||||||||||| |||| |||||||||||||
Sbjct 25981 AAAAGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCAGGACGAGGCGGTACTTGTGATA 25922
Query 186687 GTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGG 186746
||| | |||| | || ||| | |||| |||||| || ||||| || | ||||
Sbjct 25921 TTTCGGCTTGGTACTTATTTTATTTGGCTGTTTTCTGGATGTTAAATACCATTGGGTGGG 25862
Query 186747 CAGATTTTTATTGGCACTGGAA 186768
||||||||||| |||||
Sbjct 25861 TTACCTTTTATTGGCATTGGAA 25840
>seq2629
Length=60788
Score = 111 bits (122), Expect = 2e-19
Identities = 122/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 182500 TAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGATGT 182559
|||||| |||||||| | || || || || |||||||| |||||||| ||||
Sbjct 45966 TAAAATTTATGATACATTTATAGGGTGTACTCAATGTGTCCGAGCTTGTCCCACACATGT 46025
Query 182560 ATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAAC 182619
|||||||||| | ||||||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 46026 ATTAGAAATGATACCTTGGGATGGATGTAAAGCGAAACAAATAGCTTCTGCTCCAAGAAC 46085
Query 182620 TGAGGATT-GTGTAGGATGTAAGAGATGTGAAACAGCATGT 182659
| |||| |||| | |||||||||||| || | || |||
Sbjct 46086 AAAAGATTGGTGTCAGTTGTAAGAGATGTAAATCTGCTTGT 46126
>seq200
Length=274971
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 186818 ACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACA 186877
|| ||| | ||||| ||||| ||||||||||| ||| || | | | | ||||
Sbjct 230270 ACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAAT 230211
Query 186878 GGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGT 186937
|| || | |||||||||||||||| | | || || ||||| ||||||||||| |||||
Sbjct 230210 GGATATAATCCATTTGGTATGAATAGTTTATCGGTTTGGGCGTGGATGTTCTTATTTGGA 230151
Query 186938 CATTTAGTTTGGGCAACAGGATTTATGTTCCTTATT 186973
||| | |||||||| || |||||||||||| | |||
Sbjct 230150 CATCTTGTTTGGGCTACGGGATTTATGTTCTTAATT 230115
>seq2615
Length=61679
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/166 (73%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 136389 GGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGGAAAAGATTGGCTAGTATTGGA 136448
|| || ||||| |||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 39807 GGTATCCTTGCCATTGATGAATCTAATGCAACTTGTGGAAAAAGGTTGGCGTCTATTGGC 39748
Query 136449 GTAGAAAATACAGAGGCAAATAGACAGGCATACAGAGGTATGTTAT--TTACCACAGAGG 136506
|||| || ||||| || ||| | ||||||||| ||| | || | |||| || |
Sbjct 39747 TTAGATAACACAGAAGCTAATCGCCAGGCATAC--AGGCAGCTTCTCCTTACGACGCCTG 39690
Query 136507 GATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAAACACT 136552
| ||||| | |||||| |||| | ||| ||||||| ||||||||
Sbjct 39689 GGCTAGGTGAATATATTTCTGGTTCCATCCTATTTGAGGAAACACT 39644
>seq814
Length=133700
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 190358 ATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAAC 190417
|| ||||||||||||||||| || ||| || | ||||| || |||||| |||||||||
Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245
Query 190418 TCAAGAAGTTTACACTTCTTCTTAGCAGTATTCCCTGTA 190456
|| | |||||||||||||||||| | | ||||||
Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTA 56206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631338815977680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |