Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq319 93.3 3e-14
seq355 87.8 1e-12
seq843 86.0 4e-12
>seq319
Length=213347
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| |||||||| ||||| || ||||| ||||| |||| ||||| ||| |
Sbjct 180541 AATGCAAATCTTTGTGAAGACTCTCACAGGGAAGACCATTACCCTTGAAGTCGAGAGCTC 180600
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| | || ||||| ||||| || || ||||| || ||| |||| ||
Sbjct 180601 CGATACCATTGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGAC 180658
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965
||||| |||| || || |||||||| || | || || | |||| |||| |||| ||
Sbjct 180659 CAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTTG-CCGACTA 180717
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||| || ||| || | || ||||| | ||| | ||||| ||
Sbjct 180718 CAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTTCGTGGTGG 180768
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || |||||||||||||| ||||| | || || || ||| ||
Sbjct 180770 ATGCAGATATTCGTCAAGACTCTTACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 180829
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || ||||| | | | || || | | || ||||| |||||| | || ||
Sbjct 180830 GACACCATTGACAAT-GTTAAGACCAAGATTCAG--GACAAGGAAGGTATCCCCCCAGAC 180886
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| |||| ||||| || || || || | || || | || | ||| | || |||
Sbjct 180887 CAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACTTTGGCTGACTAC 180946
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || ||| |||| | |||||||| | |||||| | || ||
Sbjct 180947 AACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 180996
>seq355
Length=215899
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || || || |||||||| ||| || |||| || |||||| |
Sbjct 204612 ATGCAGATCTTTGTAAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 204671
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | | ||| || ||| ||||| ||||| |||||| |||| || |
Sbjct 204672 GACACTATTGATAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGACC 204729
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
|||| |||| || |||||||||||||| | || || | |||| |||| | ||||||
Sbjct 204730 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 204788
Query 27967 AACATCCAAAAAGAG 27981
|||||||| || |||
Sbjct 204789 AACATCCAGAAGGAG 204803
>seq843
Length=130910
Score = 86.0 bits (94), Expect = 4e-12
Identities = 141/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| ||||| |||||||| || ||||||||| || || | || |||||| |
Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAAT-C 120185
Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
| || || || ||||| |||||| || || ||||||||||| | ||
Sbjct 120186 ATCGGACACAATCGACAAT--GTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCA 120243
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGA 27962
|| || ||||| ||||| ||||| || ||||||||||| || | | | | |||| | ||
Sbjct 120244 GATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTG-CAGA 120302
Query 27963 TTACAACATCCAAAAAGA 27980
||||||||| || || ||
Sbjct 120303 TTACAACATTCAGAAGGA 120320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355813833456546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |