Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq319 93.3 3e-14 seq355 87.8 1e-12 seq843 86.0 4e-12 >seq319 Length=213347 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||||| || ||||| ||||| |||| ||||| ||| | Sbjct 180541 AATGCAAATCTTTGTGAAGACTCTCACAGGGAAGACCATTACCCTTGAAGTCGAGAGCTC 180600 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || ||||| ||||| || || ||||| || ||| |||| || Sbjct 180601 CGATACCATTGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGAC 180658 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || || |||||||| || | || || | |||| |||| |||| || Sbjct 180659 CAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTTG-CCGACTA 180717 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| || | || ||||| | ||| | ||||| || Sbjct 180718 CAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTTCGTGGTGG 180768 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || |||||||||||||| ||||| | || || || ||| || Sbjct 180770 ATGCAGATATTCGTCAAGACTCTTACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 180829 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| | | | || || | | || ||||| |||||| | || || Sbjct 180830 GACACCATTGACAAT-GTTAAGACCAAGATTCAG--GACAAGGAAGGTATCCCCCCAGAC 180886 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||| || || || || | || || | || | ||| | || ||| Sbjct 180887 CAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACTTTGGCTGACTAC 180946 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| | |||||||| | |||||| | || || Sbjct 180947 AACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 180996 >seq355 Length=215899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || |||||||| ||| || |||| || |||||| | Sbjct 204612 ATGCAGATCTTTGTAAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 204671 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || ||| ||||| ||||| |||||| |||| || | Sbjct 204672 GACACTATTGATAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGACC 204729 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || |||||||||||||| | || || | |||| |||| | |||||| Sbjct 204730 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 204788 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 204789 AACATCCAGAAGGAG 204803 >seq843 Length=130910 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| || ||||||||| || || | || |||||| | Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAAT-C 120185 Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || || || ||||| |||||| || || ||||||||||| | || Sbjct 120186 ATCGGACACAATCGACAAT--GTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCA 120243 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGA 27962 || || ||||| ||||| ||||| || ||||||||||| || | | | | |||| | || Sbjct 120244 GATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTG-CAGA 120302 Query 27963 TTACAACATCCAAAAAGA 27980 ||||||||| || || || Sbjct 120303 TTACAACATTCAGAAGGA 120320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355813833456546