Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq51 82.4 7e-11 >seq6 Length=1196388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| ||||| | |||||| || || || ||| ||||| ||||| ||||| ||| Sbjct 28792 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 28851 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | ||||||||||| || || ||||| || | | |||||||| | || Sbjct 28852 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 28911 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| || || ||||| | | | || || ||| ||| Sbjct 28912 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCT---CTCA 28968 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || |||| || |||||||| |||||||| Sbjct 28969 ACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018 >seq51 Length=574565 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 || || || || ||| ||| ||||| || || || || || || |||| | ||||| Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 463632 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || || || || || | ||||||||| |||||| | | ||| || ||| | Sbjct 463631 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGG-ATACCCTCCTTATCC-T 463574 Query 39195 GATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || |||| || | | || || | |||||| || | ||||| | | Sbjct 463573 GAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCT 463514 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| ||||| |||||||||||||||| Sbjct 463513 TGCCAGTCAGGGTTTTCACAAAGATTTGCATCT 463481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429486977495774