Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 1e-13
seq51 82.4 7e-11
>seq6
Length=1196388
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|||||||| ||||| | |||||| || || || ||| ||||| ||||| ||||| |||
Sbjct 28792 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 28851
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || | | ||||||||||| || || ||||| || | | |||||||| | ||
Sbjct 28852 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 28911
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234
| || || |||||| || || ||||| | | | || || ||| |||
Sbjct 28912 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCT---CTCA 28968
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||| ||||| | || || |||| || |||||||| ||||||||
Sbjct 28969 ACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018
>seq51
Length=574565
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|| || || || ||| ||| ||||| || || || || || || |||| | |||||
Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 463632
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| || || || || || || | ||||||||| |||||| | | ||| || ||| |
Sbjct 463631 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGG-ATACCCTCCTTATCC-T 463574
Query 39195 GATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| || |||| || | | || || | |||||| || | ||||| | |
Sbjct 463573 GAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCT 463514
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || ||||| ||||| ||||||||||||||||
Sbjct 463513 TGCCAGTCAGGGTTTTCACAAAGATTTGCATCT 463481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429486977495774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |