Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1427 134 9e-27 seq2834 131 1e-25 seq843 131 1e-25 seq355 131 1e-25 seq338 122 6e-23 seq319 114 9e-21 seq51 107 1e-18 seq6 95.1 8e-15 >seq1427 Length=108667 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| ||||| || || || || || || ||| Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | || | | ||||||||||| | || ||||| Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGCATCCCACCAGA 17716 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || || ||||| ||||| || ||||| | |||||||||| ||| || Sbjct 17717 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 17776 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 17777 CAACATCCAGAAGGAGTCCAC 17797 >seq2834 Length=64598 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||||||||| | || || || Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGA-TCCAAGACAAAGAAGGCATCCCACCCGA 823 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| || | || || ||||| ||||| || ||||| | |||||||||| ||| || Sbjct 824 CCAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 883 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 884 CAACATCCAGAAGGAGTCAAC 904 >seq843 Length=130910 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || ||||| || || || ||||| || || Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | ||||| || | | ||||||||||| | || ||||| Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGA-TCCAAGACAAAGAAGGCATCCCACCAGA 120245 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| || ||||| ||||| || |||||| ||||||| | | | || | | ||||| Sbjct 120246 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 120305 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 120306 CAACATTCAGAAGGAATCGAC 120326 >seq355 Length=215899 Score = 131 bits (144), Expect = 1e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || || || ||||| || |||||||| | Sbjct 204384 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACTATCACCCTTGAAGTTGAGAGTTCT 204443 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || | ||||| ||||||| ||||| |||||| | || ||||| || Sbjct 204444 GACACTATTGATAACGTCAAAAC-AAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 204502 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || || ||||| | ||||| | | |||||||| Sbjct 204503 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 204562 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 204563 CATCCAGAAGGAGTCGACA 204581 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || ||||| | | Sbjct 204612 ATGCAGATCTTTGTAAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 204671 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| ||||||| |||| | ||||| |||||| | || ||||| || Sbjct 204672 GACACTATTGATAATGTTAAAACCAAAA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 204730 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| || || || | |||||| | | |||||||| Sbjct 204731 GCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTGCTGATTACAA 204790 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 204791 CATCCAGAAGGAGTCAAC 204808 >seq338 Length=211836 Score = 122 bits (134), Expect = 6e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| || ||||| ||||| ||||| || || ||||| || Sbjct 171491 AAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAATCT 171432 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | | ||| | || | |||| || |||||||||||| | | || || Sbjct 171431 AGTGACACCATCAACAATGTCAAGGCTAAAA-TTCATGACAAAGAAGGCATTCAACCCGA 171373 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| | || || ||||| || ||||| |||||| | || ||| ||| |||||| Sbjct 171372 TCAACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCCGATTA 171313 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 171312 CAACATCCAGAAAG 171299 >seq319 Length=213347 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | || ||||| || ||||| ||||| ||||| | | Sbjct 180997 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTC 181056 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || ||| ||||| ||||| | || ||||| | Sbjct 181057 GGACACCATTGACAATGTCAAGGC-GAAGATTCAGGACAAGGAAGGCATCCCCCCAGACC 181115 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || |||||||| | | | ||| | | ||||||| Sbjct 181116 AGCAGAGGTTGATTTTTGCCGGGAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACA 181175 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || || ||||| || | || || || | | ||| | |||||| Sbjct 181176 ATATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTTTGAGGGGAGGA 181225 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||||| || ||||| || ||||||||||| || || | Sbjct 180086 ATGCAAATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 180145 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || || || || ||||| ||||| | || ||||| || Sbjct 180146 GACACCATTGACAATGTCAAGAC-TAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 180204 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| ||||| || || |||| || || ||| || ||||| Sbjct 180205 GCAAAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGCCGAACCCTAGCTGACTACAA 180264 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 180265 CATTCAAAAGGAGTCAAC 180282 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||| | || || || || |||||| | || ||||| | | Sbjct 181225 AATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTTGAGAGCTC 181284 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||||| |||| ||| | || | || || ||||| || || | || ||||| | Sbjct 181285 GGACACTATTGATAATGTGAAGGC-TAAGATCCAGGACAAGGAGGGGATCCCCCCAGACC 181343 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || || | || || | | ||||||| Sbjct 181344 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGCGTACCCTTGCTGATTACA 181403 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 181404 ACATTCAGAAGGAGTCTAC 181422 >seq51 Length=574565 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| |||||||| ||||| || |||||||| | | Sbjct 463939 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTTGAAAGCTCT 463998 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| || ||| ||| ||||| || || | || ||||| || Sbjct 463999 GACACTATCGATAACGTTAAGAC-AAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 464057 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||| || | | | || || | |||||||| Sbjct 464058 GCAGAGGCTGATCTTTGCCGGGAAGCAGTTGGATGATGGAAGGACATTGGCTGATTACAA 464117 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || || || | || | ||||| | ||||| Sbjct 464118 TATTCAGAAGGAATCTACTTTGCACCTGGTGCTTCGGTTGAGGGGAGG 464165 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| ||||| | | Sbjct 464395 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACTATCACCCTCGAGGTTGAGACTTCT 464454 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || || | || ||||| || ||| | || ||||| || Sbjct 464455 GATACAATTGAGAATGTGAAGACTAAGA-TTCAGGACAAGGAGGGTATCCCCCCAGACCA 464513 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||| |||| || | || || || | |||||||| Sbjct 464514 GCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGTCGAACCTTGGCTGATTACAA 464573 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| ||||| || | ||| | ||| Sbjct 464574 CATTCAAAAGGAGTCTACCCTCCATCTTGTT 464604 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || || || || ||||| ||||| || |||||||| | | Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || || ||| || || || || | || || || || Sbjct 464227 GATACAATTGACAATGTGAAGAC-GAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||| || | | ||||| | |||||||| Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 464346 CATCCAAAAGGAATCAAC 464363 >seq6 Length=1196388 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || |||||| | || ||||| | | Sbjct 29702 ATGCAAATTTTTGTGAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCA 29643 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| |||| || || | || |||||||| || | || || ||||| Sbjct 29642 GACACTATTGACAATGTTAAGACTAAGA-TTCAGGACAAAGAGGGAATTCCCCCGGATCA 29584 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || || || | ||| ||| | | |||||||| Sbjct 29583 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACAA 29524 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | ||| | ||| Sbjct 29523 CATCCAGAAGGAGTCAACCCTCCATCTTGTT 29493 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || |||||||| || || | || ||||| | | Sbjct 29931 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 29872 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||||| || ||| |||| || || | || ||||||||||| | || || |||| Sbjct 29871 TGACACTGTCGACAATGTTAAGACCAAGA-TTCAGGACAAAGAAGGAATCCCCCCGGATC 29813 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || || | ||| ||| | | ||||||| Sbjct 29812 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTACA 29753 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 29752 ACATCCAGAAGGAGTCAAC 29734 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || || ||||| || || ||||| | | Sbjct 28562 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGAGGTTGAGAGCTCA 28503 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||||| || ||| | ||||| ||||| || || || || | || || || || Sbjct 28502 GATACTGTCGATAATGTGAAAAC-TAAAATCCAGGATAAGGAGGGGATTCCCCCGGACCA 28444 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| ||||| || || ||||| || || | |||||| || | || ||||| Sbjct 28443 GCAGAGACTAATCTTTGCAGGGAAGCAACTCGAGGATGGACGCACCTTGGCTGACTACAA 28384 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 28383 TATTCAGAAAGAATCCAC 28366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337963469928584