Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq20 141 8e-29
>seq20
Length=765589
Score = 141 bits (156), Expect = 8e-29
Identities = 541/836 (65%), Gaps = 30/836 (4%)
Strand=Plus/Minus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| || ||||||||||| || |||| | || || ||||| |||| |||
Sbjct 522447 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAAC 522388
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| || | |||| ||||||||| || || | | || | ||| || |||
Sbjct 522387 GGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAACAGCCTGTCTGCAACA 522328
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451
|| || || ||||||||||| || || ||||| || |||| | |||| || |||||
Sbjct 522327 AACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCA 522268
Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511
| || | |||||| | || || || || || | | ||| | | | || ||
Sbjct 522267 TCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACTATCCCCTGCACCTTCTCA 522208
Query 4512 ----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567
| || | || || | |||| | | | | || ||||||||||| || |
Sbjct 522207 ACACTCAGCTTCTTC-TTCAGTAAG---CTGTATAGCAGGCAGGCAAAATCACAGTGAAG 522152
Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626
|||||||||| || | ||||| ||||| || || ||||| || |||||||| || | ||
Sbjct 522151 CCCTTCGTCTC-GCGATATCAGCTCGTTTGAGAAGGTTAAACCCGGCATTAACCCACGCT 522093
Query 4627 TTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684
|||| ||||| || || ||| | || | ||||| ||||| || ||||| || ||
Sbjct 522092 TTTTGAGCCAGAAGATGGAGCAGAAACTT--CCAGAGAAGAAAATCCCTTCAACACAAGC 522035
Query 4685 AAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCA 4744
||| || | || | | ||||| || || |||||| | |||||
Sbjct 522034 AAAAGCAATCAACCTCTCAGCAAACGATTCAGCACCATC---AATCCAACGAAGAGCCCA 521978
Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT--- 4801
| || || |||||||| || || || || | || || ||| | | | ||
Sbjct 521977 ATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGGGTCTTAAG 521918
Query 4802 -TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860
|| ||| ||| || ||||| |||| || || ||||||||||| || || |
Sbjct 521917 GTTAGAAT----CTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGAATGT 521862
Query 4861 TTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919
|||| || || || || || || || ||||| | |||||| | || ||||| || ||
Sbjct 521861 TTTCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTTCAGCAACCTGAACCTCCTTC 521803
Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979
|||||| | | | || ||| || || ||||| || || || || || |
Sbjct 521802 ATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAGGCGAGG 521743
Query 4980 ACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTT--TTTTCCAGTGGGGCAAATCT 5036
| || | || || | ||||||||| | | ||||| | ||| |||||| | | ||||
Sbjct 521742 ATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGAACATCT 521683
Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092
| | | ||| |||||||| ||||||| || || ||||| ||||||||||||||
Sbjct 521682 TGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACAT 521627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426991318138934
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |