Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq20 141 8e-29 >seq20 Length=765589 Score = 141 bits (156), Expect = 8e-29 Identities = 541/836 (65%), Gaps = 30/836 (4%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| | || || ||||| |||| ||| Sbjct 522447 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAAC 522388 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | |||| ||||||||| || || | | || | ||| || ||| Sbjct 522387 GGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAACAGCCTGTCTGCAACA 522328 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || ||||||||||| || || ||||| || |||| | |||| || ||||| Sbjct 522327 AACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCA 522268 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || | |||||| | || || || || || | | ||| | | | || || Sbjct 522267 TCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACTATCCCCTGCACCTTCTCA 522208 Query 4512 ----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || | || || | |||| | | | | || ||||||||||| || | Sbjct 522207 ACACTCAGCTTCTTC-TTCAGTAAG---CTGTATAGCAGGCAGGCAAAATCACAGTGAAG 522152 Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 |||||||||| || | ||||| ||||| || || ||||| || |||||||| || | || Sbjct 522151 CCCTTCGTCTC-GCGATATCAGCTCGTTTGAGAAGGTTAAACCCGGCATTAACCCACGCT 522093 Query 4627 TTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 |||| ||||| || || ||| | || | ||||| ||||| || ||||| || || Sbjct 522092 TTTTGAGCCAGAAGATGGAGCAGAAACTT--CCAGAGAAGAAAATCCCTTCAACACAAGC 522035 Query 4685 AAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCA 4744 ||| || | || | | ||||| || || |||||| | ||||| Sbjct 522034 AAAAGCAATCAACCTCTCAGCAAACGATTCAGCACCATC---AATCCAACGAAGAGCCCA 521978 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT--- 4801 | || || |||||||| || || || || | || || ||| | | | || Sbjct 521977 ATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGGGTCTTAAG 521918 Query 4802 -TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 || ||| ||| || ||||| |||| || || ||||||||||| || || | Sbjct 521917 GTTAGAAT----CTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGAATGT 521862 Query 4861 TTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 |||| || || || || || || || ||||| | |||||| | || ||||| || || Sbjct 521861 TTTCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTTCAGCAACCTGAACCTCCTTC 521803 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||| | | | || ||| || || ||||| || || || || || | Sbjct 521802 ATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAGGCGAGG 521743 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTT--TTTTCCAGTGGGGCAAATCT 5036 | || | || || | ||||||||| | | ||||| | ||| |||||| | | |||| Sbjct 521742 ATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGAACATCT 521683 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | | ||| |||||||| ||||||| || || ||||| |||||||||||||| Sbjct 521682 TGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACAT 521627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426991318138934