Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20 223 5e-53 seq63 84.2 3e-11 >seq20 Length=765589 Score = 223 bits (246), Expect = 5e-53 Identities = 595/900 (66%), Gaps = 17/900 (2%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || | ||||| || |||||||| || |||| | || || Sbjct 522463 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 522404 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTA--TAAAtttttttAAATCCTAATTCTGAA 47966 ||||| |||| || || || ||| | | |||| |||| | | || | | | | Sbjct 522403 CTCCATCCAATCGAACGGGTT--CTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCC 522346 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | ||| || |||||||| || || || || |||||| ||||| ||||| || | Sbjct 522345 AACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACC 522286 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || || || || || || || || | |||||| | ||||| ||| |||||| || | Sbjct 522285 AGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACT 522226 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTAAACATTAAACATG 48144 ||| ||| | || |||| | | | || || | || | | || | Sbjct 522225 ATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC--AGGCAGG 522168 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||| ||||| ||||| |||| || | ||||| || || || | ||| | Sbjct 522167 CAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACCCG 522108 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| ||||| ||||||||||| || || | |||| |||||| ||||| || | Sbjct 522107 GCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAATCC 522048 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCC 48321 |||| || ||||| || | | ||||| | ||| | ||| | |||| Sbjct 522047 CTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AAC--GATTCAGCACCATCAATCC 521991 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | || | |||||||| ||||||||||| |||||||| || ||||| || ||| ||| | Sbjct 521990 AACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 521931 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || | | || || |||||| | |||||| |||| | |||| |||||||| | Sbjct 521930 GATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAG 521871 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 ||||||| |||||||| || || || || || || ||| | ||||| | | ||| | Sbjct 521870 AGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAA 521811 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 ||||| | |||| | | || | |||||| || || || || || || || | Sbjct 521810 CCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGA 521751 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG-TCAGTT--TATTCCAGTCAT 48618 | || | | || | || |||| | ||||| || | | || | | | ||||| | Sbjct 521750 AGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGAC 521691 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 | ||||| || | ||| |||||||| || ||||| ||||| || || |||||||| | Sbjct 521690 GAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGT 521631 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| | ||| || | ||||| |||||||| ||| ||||||| ||| |||| || Sbjct 521630 ACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 521571 >seq63 Length=488123 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 |||||||| || | ||||| || || | |||| | || | || ||| || | ||| || Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| ||||| || ||| |||||||||||| | || || || || | || Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| || ||||| | || || | | || | ||| || |||| ||||| || || Sbjct 276901 ACCCCAATACCTCCAG-CAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 276959 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||||| | ||| || |||||| Sbjct 276960 CCCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694571563734720