Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq20 233 3e-56 seq63 107 3e-18 >seq20 Length=765589 Score = 233 bits (258), Expect = 3e-56 Identities = 595/898 (66%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | ||||| || |||||||| || |||| | || || Sbjct 522463 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 522404 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||| ||||| || ||| |||| |||| | | || | | | | | Sbjct 522403 CTCCATCCAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAA 522344 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 ||| || |||||||| || || || ||| |||||| ||||| ||||| || | || Sbjct 522343 CAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACCAG 522284 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || ||||| || || || || | |||||| | || || ||| |||||| || ||| Sbjct 522283 CTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACTAT 522224 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | || | || |||| | | | ||| || | || | | || ||| Sbjct 522223 CCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC--AGGCAGGCA 522166 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| ||||| ||||| |||| || | ||||| || || || | || ||| Sbjct 522165 AAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACCCGGC 522106 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 |||| ||||||||||||||||| || || | |||| |||||| ||||| || ||| Sbjct 522105 ATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAATCCCT 522046 Query 46756 TCTACAGCCGCGAATGCGA-CAAGTCTCTCTCCGTAACTGG--CATCATTATGAATCCAC 46812 || ||| || || || | ||| ||||| | || | || || || |||||| Sbjct 522045 TCAACACAAGCAAAAGCAATCAAC---CTCTCAGCAAACGATTCAGCACCATCAATCCAA 521989 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||||| ||||| ||||| |||||||| || ||||| || ||| ||| ||| Sbjct 521988 CGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 521929 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 | | || | | |||||| | || || |||| | |||| |||||||| || Sbjct 521928 TGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAG 521869 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 |||||||||||||| || || || || || || ||| | ||||||| || ||| ||| Sbjct 521868 TGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAACC 521809 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 || | |||| | | | | |||||| || || || || || || || || Sbjct 521808 TCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAG 521749 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTT--TATTCCAGTCATTG 47109 || | | || | || |||| | ||| ||||| | | || | | | ||||| | Sbjct 521748 GCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGA 521689 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | ||||| || | ||| |||||||| || ||||||||||| || || |||||||| ||| Sbjct 521688 ACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTAC 521629 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 || | ||| || | | |||| || || || ||| ||||||| ||| |||| || Sbjct 521628 ATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 521571 >seq63 Length=488123 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 |||||||| || | ||||| ||||| | |||| | || | || ||| || | |||||| Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || ||| |||||||||||| ||||| || || | ||| Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| |||| || ||||| || Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||||| | ||| || |||||| Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712834607007360