Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq20 233 3e-56
seq63 107 3e-18
>seq20
Length=765589
Score = 233 bits (258), Expect = 3e-56
Identities = 595/898 (66%), Gaps = 13/898 (1%)
Strand=Plus/Minus
Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397
||| || || || || || | ||||| || |||||||| || |||| | || ||
Sbjct 522463 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 522404
Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457
||||| |||| ||||| || ||| |||| |||| | | || | | | | |
Sbjct 522403 CTCCATCCAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAA 522344
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
||| || |||||||| || || || ||| |||||| ||||| ||||| || | ||
Sbjct 522343 CAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGTTCATCCCAACCAG 522284
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
|| ||||| || || || || | |||||| | || || ||| |||||| || |||
Sbjct 522283 CTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTTACTAT 522224
Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635
| || | || |||| | | | ||| || | || | | || |||
Sbjct 522223 CCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC--AGGCAGGCA 522166
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
|||||||| ||||| ||||| |||| || | ||||| || || || | || |||
Sbjct 522165 AAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAACCCGGC 522106
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755
|||| ||||||||||||||||| || || | |||| |||||| ||||| || |||
Sbjct 522105 ATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAATCCCT 522046
Query 46756 TCTACAGCCGCGAATGCGA-CAAGTCTCTCTCCGTAACTGG--CATCATTATGAATCCAC 46812
|| ||| || || || | ||| ||||| | || | || || || ||||||
Sbjct 522045 TCAACACAAGCAAAAGCAATCAAC---CTCTCAGCAAACGATTCAGCACCATCAATCCAA 521989
Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872
| |||||||||| ||||| ||||| |||||||| || ||||| || ||| ||| |||
Sbjct 521988 CGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 521929
Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932
| | || | | |||||| | || || |||| | |||| |||||||| ||
Sbjct 521928 TGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAG 521869
Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992
|||||||||||||| || || || || || || ||| | ||||||| || ||| |||
Sbjct 521868 TGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAACC 521809
Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052
|| | |||| | | | | |||||| || || || || || || || ||
Sbjct 521808 TCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAG 521749
Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTT--TATTCCAGTCATTG 47109
|| | | || | || |||| | ||| ||||| | | || | | | ||||| |
Sbjct 521748 GCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGA 521689
Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169
| ||||| || | ||| |||||||| || ||||||||||| || || |||||||| |||
Sbjct 521688 ACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTAC 521629
Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227
|| | ||| || | | |||| || || || ||| ||||||| ||| |||| ||
Sbjct 521628 ATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 521571
>seq63
Length=488123
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|||||||| || | ||||| ||||| | |||| | || | || ||| || | ||||||
Sbjct 276781 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 276840
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| ||||| ||||| || ||| |||||||||||| ||||| || || | |||
Sbjct 276841 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 276900
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || ||||| || ||| ||| | |||||| |||| || ||||| ||
Sbjct 276901 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 276960
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
|| || || |||||||| ||||||| | ||| || ||||||
Sbjct 276961 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 277002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712834607007360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |